Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2003 ATGAGCTACTCCAAAAACGACGCCGTCGTGGAAACCGAGCCAACGACACCACCAACACAAAACGACAGCACCGTTTTGTTCGGCAAGTACGAGCTCGGCGAACTTCTGGGCGTAGGAGCGTCCGCTAAAGTGTACCACGCGACGCGCGTGGCCGACGGTGGAAGCGTGGCAGTTAAGGCCGTTAGCAAACGCAACATCGTTTCCAACTGCCATGCAGCCAACGTGGAGCGCGAGATCTCCGTCACGCGCCGCCTCCGCCACCACCCAAACATCATCAACCTCCTTGAGGTCCTCGCCACCAAGACCAAAATCTACCTTGTCATGGAGTTCGCCGCCGGCGGAGAACTTTTCCAGAAGGTCGCCCACGGCGGCCGCTTGACGGAAGACGTCGCCAGAAAATATTTCCGGCAGCTCATCTCCGCCGTAAAGCACTGCCACTCCGCCGGCGTCTACCACCGTGATCTCAAGCTCGACAACCTCCTCCTTGACGATGACGGCAACCTTCAAGTCTCCGATTTCGGGTTGAGCGCCGTGAAGAACCAGATCCGACCTGATGGCTTGCTCCACACAGTTTGTGGGACCCCTGCTTACGTGGCACCTGAGATCTTGGCCAAGAAAGGATATAATGGCGCCACGGTGGACGTGTGGTCCTGCGGCGTCGTTTTGTTTGCATTGACAGCGGGCTTTTTACCCTTCAATGATTACAATATTACAGTTTTGTACAGGAAGATTTACCGCGGTCAGTTTCGGTTTCCAAAGTGGATATCTTGTGGATTAAGAAACCTTATATCGCGTTTGTTGGATGTAAATCCAGAAACGCGAATTACCGTTGACGAGATTATGCAAGACCCGTGGTTTAATTCGGGTGGGTATAAACTTAATCGGGTTCTTGTTGAAGAACCCGAATGGGAGAAGAGTCAAATAAAAATTAAAACGTTAAATGCATTTGACTTGATATCTTTTTCGACTGGGTTGGACATGTCGGGTCTGTTTGTGAATAACGGTGTTCTGAATCATGTGGAGCGATTTGTCCTGAGAGAGAAAGTAGAGAGGATACTAGAGAAGGTGGATGAGTTGGCTAAGGGGACCAATTTAACAGTGACAAGGAATGAGAAATGTGAAGGTGCAAGGTTGGAAGGGCAAGATGGTAATTTAGTTGCCCTTGTGTTGGTTTACCGGTTAACGGATGAGTTGGTGGTGGTTGAAGTCAAGAGTATTGGAAAGATGAATTGCAACCCCAACTTTATGAGTTGCCTCATGGATAACGGGCATAACTCTTTAGAATTTTAG 1290 0.4984 MSYSKNDAVVETEPTTPPTQNDSTVLFGKYELGELLGVGASAKVYHATRVADGGSVAVKAVSKRNIVSNCHAANVEREISVTRRLRHHPNIINLLEVLATKTKIYLVMEFAAGGELFQKVAHGGRLTEDVARKYFRQLISAVKHCHSAGVYHRDLKLDNLLLDDDGNLQVSDFGLSAVKNQIRPDGLLHTVCGTPAYVAPEILAKKGYNGATVDVWSCGVVLFALTAGFLPFNDYNITVLYRKIYRGQFRFPKWISCGLRNLISRLLDVNPETRITVDEIMQDPWFNSGGYKLNRVLVEEPEWEKSQIKIKTLNAFDLISFSTGLDMSGLFVNNGVLNHVERFVLREKVERILEKVDELAKGTNLTVTRNEKCEGARLEGQDGNLVALVLVYRLTDELVVVEVKSIGKMNCNPNFMSCLMDNGHNSLEF* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2003 429 MobiDBLite consensus disorder prediction 1 22 - -
Amo04g2003 429 Gene3D Phosphorylase Kinase; domain 1 32 115 - -
Amo04g2003 429 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 15 406 - -
Amo04g2003 429 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Amo04g2003 429 PANTHER - 15 406 - -
Amo04g2003 429 Gene3D Transferase(Phosphotransferase) domain 1 116 290 - -
Amo04g2003 429 SUPERFAMILY Protein kinase-like (PK-like) 26 319 IPR011009 -
Amo04g2003 429 Gene3D Kinase associated domain 1, KA1 308 421 - -
Amo04g2003 429 Pfam NAF domain 311 368 IPR004041 GO:0007165
Amo04g2003 429 SMART serkin_6 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2003 429 Pfam Protein kinase domain 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2003 429 CDD CIPK_C 314 404 - -
Amo04g2003 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Amo04g2003 429 ProSiteProfiles Protein kinase domain profile. 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2003 429 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2003 Amo-Chr4 89281180 89282899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2003 19 407 CBL-interacting serine-threonine protein kinases AT2G30360 55.443 2.09e-156 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo04g2003 Pkinase 2.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2003 - K12761 gmx:100788245 511.916