Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1993 ATGGAACAAAAAGGAAGTGTGCTTATGCAGCGATACGAACTAGGGAAGTTATTAGGCCAAGGGACCTTTGCAAAGGTCTACCATGCTAGGAACCTTGCAACTGGCATGAGTGTGGCCATTAAGGTAATTGATAAAGAGAAGATATTGAAAGTTGGGATGATTGAACAGATTAAGCGTGAAATTTCTGTGATGAGACTAATTCAGCATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAGTAAAACCAAAATCTACTTCGTCATGGAGTATGCAAAAGGGGGTGAGCTCTTCAACAAGATACTTAAAGGAAAACTCAAAGAGGATGTTGCCAGGAGATACTTTCAGCAACTGATTAGTGCAGTAGACTATTGTCACAGCCGGGGTGTGTGCCATCGAGATTTGAAACCAGAAAATCTACTATTGGATGAAAATGAGAATTTGAAGGTTTCAGACTTTGGATTGAGTGCTCTTGCTGAATCGAAGCACCAAGATGGATTACTCCATACAACATGTGGTACGCCGGCCTATGTTGCGCCAGAAGTGATAAACAGAAGGGGTTATGATGGGGTGAAAGCTGATATATGGTCCTGCGGGGTAGTCTTGTTTGCTCTGCTGGCTGGTTATCTTCCATTCCAGGATAAAAATCTGATGGAGATGTATAGGAAAATCGGTAAGGCGGAATTCAAATTTCCTAAGTGGTTTGCACCTGATGTTCGCCGATTGTTGTCCAAAATCTTGGATCCAAACCCAAGGACAAGGATATCAATGGCCAAAATCATGGAAAGTTCTTGGTTTAAAAAGGGGTTAGACAAGTCTGTGATTACTGCAACTGAAAACAAAGAGCTAGCCCCTCTGGATGCTGAAGGTGTTTTCGACACATGCGAGAACTGTCCAATTGCAAAGCCCAAGAAAGAGCAGGGAAAACCTTTCAATTTAAATGCCTTTGACATAATCTCTTTCTCCTCCGGCTTTGACTTATCCGGTTTGTTTGAGGATGCCGAGCAAAAGAAAGAGGTCCGGTTCACATCCAACAAGTCCGCCTCGACCATATTCTCTAAGTTGGAAGACATTTGCAAGCGCTTTCAGTTAAAAGTGAATAAGAAAGACGGAGGTTTGTTGAAGTTGGAAGGTTCCAAGGAAGGCAGAAAAGGGATCTTGGGCATTGATGCTGAGATTTTCGAGATAACCCCACAGTTCCATCTGGTAGAGTTGAGAAAGGCCAATGGTGACACAGTGGAGTACAAGAAGCTTCTGAAACACGACATTCGGCCGGCTCTCAAGGACATTGTTTGGTCATGGCAGGGAGAACAACCAACACAACATGAAGTGGTGCCGGAAGAGCAACAACAGCAGTCTCATGTTGTGCCTGGTTATTAG 1380 0.437 MEQKGSVLMQRYELGKLLGQGTFAKVYHARNLATGMSVAIKVIDKEKILKVGMIEQIKREISVMRLIQHPHVVELYEVMASKTKIYFVMEYAKGGELFNKILKGKLKEDVARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRRGYDGVKADIWSCGVVLFALLAGYLPFQDKNLMEMYRKIGKAEFKFPKWFAPDVRRLLSKILDPNPRTRISMAKIMESSWFKKGLDKSVITATENKELAPLDAEGVFDTCENCPIAKPKKEQGKPFNLNAFDIISFSSGFDLSGLFEDAEQKKEVRFTSNKSASTIFSKLEDICKRFQLKVNKKDGGLLKLEGSKEGRKGILGIDAEIFEITPQFHLVELRKANGDTVEYKKLLKHDIRPALKDIVWSWQGEQPTQHEVVPEEQQQQSHVVPGY* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1993 459 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Amo04g1993 459 Gene3D Transferase(Phosphotransferase) domain 1 3 311 - -
Amo04g1993 459 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1993 459 CDD CIPK_C 314 428 - -
Amo04g1993 459 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1993 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Amo04g1993 459 Pfam NAF domain 311 368 IPR004041 GO:0007165
Amo04g1993 459 PANTHER - 2 443 - -
Amo04g1993 459 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Amo04g1993 459 CDD STKc_SnRK3 11 265 - -
Amo04g1993 459 SUPERFAMILY Protein kinase-like (PK-like) 8 278 IPR011009 -
Amo04g1993 459 Gene3D Kinase associated domain 1, KA1 312 433 - -
Amo04g1993 459 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 443 - -
Amo04g1993 459 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1993 Amo-Chr4 89055322 89058909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1993 1 438 CBL-interacting serine-threonine protein kinases AT5G58380 66.446 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo04g1993 Pkinase 1.5e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1993 K07198 - gmx:100811923 728.013