Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1984 ATGGTGCCTTCCAAAAAGAGGAGTTGTGGTTTCTACAACGCAAACAAATTTGCCAAGCTTGTGAGAAGAAGAGAGTTCATGGCCAGCGCTGCCGAGGGAACCACCGGGGCTCTTACCTGCGCCACTTGTGGCTGCCATAGAAACTTCCATAGAAGAAAGGAACTAGCTGCACCATCCAGGTGGGAGTTGAGATTTAGGTGGGTGTTGAATTGA 213 0.4977 MVPSKKRSCGFYNANKFAKLVRRREFMASAAEGTTGALTCATCGCHRNFHRRKELAAPSRWELRFRWVLN* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1984 70 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 55 - -
Amo04g1984 70 Pfam ZF-HD protein dimerisation region 24 54 IPR006456 -
Amo04g1984 70 PANTHER MINI ZINC FINGER PROTEIN 2 24 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1984 Amo-Chr4 88728011 88730155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1984 24 53 ZF-HD Transcription Factor Family AT1G74660 70.000 5.67e-11 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo04g1984 ZF-HD_dimer 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1984 - - adu:107468004 73.559