Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1979 ACATTGGATGATTGTATTAGATGGTGGTCAGAGCAGATAGATATTTTGAATCAACAAAAGGAGGATTTGGGTTTTCTTAGAGGCATTGTTGCTGCCTTCAAAGAACAAATTCACACCGATATACTTGTTAGCCCAGGTGGCCATGGTCTTCCAATACCTGCACATAAGTCTGTATTGGCAACAAGATCAGAAATCTTTAAGAACATGCTTGAGTGTGATGAATGCAAAGCAGCACCCAATAACCAAACCATAACCATACCAGACCTGAACCATGAAGAGCTATCATCTCTACTAGAGTTCCTCTACAGCGGCACACTACCTGAAGAAACAATCGCAAAGGATGTCTACGCCTTATCGCGCGCCGCCGATAAGTACGCCATCCCACATTTGTTAAGGCACTGCGAGAGGTATTTGCTGAGTTCACTCCACACTTCCAATGCACTCGAGACGCTTGAGATCGCCGACGTGTGTTCCAGTCACAATTTGAAGGAGACAACGTTGGTTTTCTTAGTTAAGAACATTGAGCATGTTGTGTCATCGCCTAGGTTTGAAGCTTTTGTCCATAGGAATCCACATTTAACTGTGCAATTGGTTTCAAGGGCTTTTGCAAATGGCTCCAAATAA 624 0.4343 TLDDCIRWWSEQIDILNQQKEDLGFLRGIVAAFKEQIHTDILVSPGGHGLPIPAHKSVLATRSEIFKNMLECDECKAAPNNQTITIPDLNHEELSSLLEFLYSGTLPEETIAKDVYALSRAADKYAIPHLLRHCERYLLSSLHTSNALETLEIADVCSSHNLKETTLVFLVKNIEHVVSSPRFEAFVHRNPHLTVQLVSRAFANGSK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1979 207 Gene3D Potassium Channel Kv1.1; Chain A 11 143 IPR011333 -
Amo04g1979 207 SMART BTB_4 39 142 IPR000210 GO:0005515
Amo04g1979 207 ProSiteProfiles BTB domain profile. 39 110 IPR000210 GO:0005515
Amo04g1979 207 SUPERFAMILY POZ domain 25 141 IPR011333 -
Amo04g1979 207 CDD BACK 143 183 - -
Amo04g1979 207 Pfam BTB/POZ domain 35 141 IPR000210 GO:0005515
Amo04g1979 207 Gene3D - 144 207 - -
Amo04g1979 207 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 2 205 IPR044784 -
Amo04g1979 207 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED 2 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1979 Amo-Chr4 88549341 88550608 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo04g1979 BTB 3.8e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1979 K10523 - gmx:100777561 334.339