Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1966 ATGCCGAATGGGAACTTGACCGATATGTTGAAGAGTAACAAGAAAAGCTTCTTGGATTGGCCAACAAGGTACAAGATTGCAATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCATGGTATTGTGCTACCCATTGTTCATAGGGATGTAAAATTGAACAACGGTCTGCAAGGACAAAAAATTGTTTTCCTTGAATTGAGAATCCTAAGGTTTATATCAAAGAATCTAAGGGCATTCTTCGAGAACTTTTAA 252 0.381 MPNGNLTDMLKSNKKSFLDWPTRYKIAIDAAEGLSYLHHGIVLPIVHRDVKLNNGLQGQKIVFLELRILRFISKNLRAFFENF* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1966 83 ProSiteProfiles Protein kinase domain profile. 1 83 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1966 83 SUPERFAMILY Protein kinase-like (PK-like) 1 56 IPR011009 -
Amo04g1966 83 Pfam Protein tyrosine and serine/threonine kinase 1 56 IPR001245 GO:0004672|GO:0006468
Amo04g1966 83 Gene3D Transferase(Phosphotransferase) domain 1 1 74 - -
Amo04g1966 83 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 57 - -
Amo04g1966 83 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1966 Amo-Chr4 88154952 88155949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1966 1 56 Receptor kinase-like Gene Family AT1G28440 66.071 7.50e-20 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo04g1966 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1966 - - adu:107483867 100.138