Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1954 ATGGGAATTGAGAGAAAGAAGAAGAGTAGTAATGGATCTGTGTGGTCTATTTTCATGCATGCGGATACCCAAGACTGGCTTCTAATGGGTTTTGGTGTGTTAGGGTCCATTGGTGAAGGTTCCACCACTCCTCTTGTGCTCTATCTCAGTAGCCTCATTATGAACAATATTGGGACTTCTTCTACCATCTCATCAACCACTTTTGTCCATTGCATCAACAAGGGTTATTGTTGGACAAGAACAAGTGAGAGACAAGCAGCAAGAATGAGAGCAAAGTACCTGAAAGCAGTGATGAGACAAGAAGTTGCATATTTTGATTTGAATGTGACAAGTACCTCAGACATTATCACTGGCGTTTCCAATGATAGCCTCCTCATTCAGGATGTTATTAGTGAGAAGGTACCAAATTTGTTGATGAACTTTTCATTGTTCATTGGGAGCTACATAGCTGGTTTTGCAATGCTATGGAGATTGGCCATAGTAGGGATCCCATTCACAGTTCTTCTTGTAATCCCTGGCTTCATTTATGGCAAGACATTAATGGGATTAGCAAAGAAAATGAGAGAAGAGTATAATAAAGCAGGTGCAATAGCTGAACAAGCAATATGTTCAATAAGAACAGTGTATTCATATGTGGGAGAAAATAAGACCATAAATGCATTCTCTAATGCTCTTCAAGGGTCACTGAGTTTGGGAATCAAACAAGGATTGGTCATGGACCATGGTGCTAAAGGAGGCACAGTTTTTTCAGCTGGAGCAGCTATCACTGTTGGTGGATTGGCACTAGGTGCTGGTTTAACCAACATGAAATACCTGAGCGAAGCAAGTTCAGCAGCGGAACGCATAAGGGAAGTCAATGAGAGAGTTCCGATGATCGATTCCGACGACAGTGACGGCGAAATCCTGGGAAGCGTTCGAGGGGAAGTAGAATTCCGAAACGTAGAGTTCGCGTACCCGACGAGACCAGAGACCCGGTTTTACGACCCTCTTGGTGGCGAAATAAGGTTTGATGGTGTTGCCATTGATAAGTTGCAGCTCAAGTGGTTCAGATCACAGATGGGGTTAGTGAGTCAAGAGCCCGTATTATTTGCCACCAGCATCAAAGAGAACATCCTGTTTGGGAAGGAGGATGCAACAGAGGCTGAGGTCATTGAGGCTGCAAAAGCTTCCAATGCTCATAATTTTATTTCCATGCTGCCTCAGGGTTATCAAACCCAGGTGGGTGAGAGAGGAACTCAAATGTCAGGTGGACAAAAGCAGAGGATTGCAATTGCTAGGGCCATAATTAAGAAGCCAAGAATGCTTCTTCTGGACGAAGCAACCAGTGCACTAGACTCCCACTCAGAGCGAATTGTCCAAAAAGCCCTCGAACAAGTGGCTGTTGGCTGCACCACCATCGTCGTCGCCCACCGCCTGTCCACGATTCGCAATGCCGACGTCATCGTTGCCATGCGAGCCGGAAAGGTGGTGGAGATGGGCACTCACGACGACCTCCTCTTGAATCATGATGGACTCTACTCCTCCATGGTTCGTCTCCAACAAACTGAGAATTCAGAAACAGATGAATCTGTAACTGCCCCAACAACTACTATTCATGTTCCTTCTTCTATGTCGGCTAGTGACACCGCTGATATTCACCACCTATGTTTAATTCATACAGATGATGATGACAACATTGAAAAGGTGGAAGAAGAGAAAGAGGAGAATAAGAACGCTCAGGCGACGGCATCGTTCTGGAGGCTGCTGGCACTGAACCTTCCGGAGTGGAAGCAAGCAGTTATGGGTTGCTTGAATGCGATGGTGTTCGGTGCAGTTCAACCGGTGTACACTTTGATTATGGGGTCGATGATGTTTGTGTATTTCGACAGCGATGATGAAGAGATGAGGAGGAAGACGAAGGAGTACTCGGTTTGCTTTGTGGGACTGTTTGTGTTGTCTTTGATTGTGAACATCGGGCAGCATTATAGCTTTGCATATATGGGAGAGTGCTTGACCAAAAGAATTAGAGAGACTATGTTTAAAAAGATACTCACCTTTGAAGTTTCCTGGTTTGATCTTTCTGAAAATTCTACCGGTGCTATTTGCTCTAGGCTTGCCAACGATGCAAATGTGGTGAGGTCTTTAGTGGGAGATAGGATTGGTTTAGTGGTGCAGACAGCGTCAGCGGTAGTAACAGCTTGGACTTTGGGTTTGGTCATTGCATGGAGACTGGCTATTGTTATGATATGTGTTCAACCCCTTATGATTGCATGCTTCTATACAAAACGTGTCCTTATCAAGACTATGTCAAAAAAGGTTGCAAAGGCGCAAGAAGAAAGTAGCAAGGTTGCCGCTGAAGCCGTTTCAAACCTAAGAACTATCACAGCCTTCTCTTCTCAAAACCGAATCCTCAAAATGCTCGAAAATGCACAAGAAGGACCAAGACGCGAGAATATCCGGCAATCATTTTACGCCGGAATCGGCCTTGCATGTTCCCAAGGCATAACATCATGTGTTTGGGCTCTAAACTATTGGTACGGTGGCAAGCTCGTCGCCGACGGTTACATCACCACAAAGGCATTGTTTCAAAGCTTCATGATTATTGTGAGTACAGCAAGAGTCATTGCCGACGCCGGAAGCATGACCTCGGACCTCGCAAAAGGCGCTGACGCCGTGTGCTCCATTTTCGCCGTCTTAGACCGGACCACGAAGATAGCGGCCGACGACGAAAATGGTCACAACCCGGAACATGTAACAGGACAAATACAACTCCATGATGTGCATTTTGCTTACCCCACTAGGCCAAACGTGACTATCTTCAAATCCTTTTCAATGAAAATAGAAGCTGGAAAGTCAACGGCATTGATAGGTCAAAGTGGATCCGGAAAGTCAACGATTATAGGGCTAATTGCAAGGTTCTATGATCCGCTAAGAGGGTACGTGACAATTGATAATAGAGATGTAAAGTCCTATAATTTGAAACAATTAAGGAGGCACATTGCACTTGTGAGCCAAGAACCTACGTTGTTCAATGGGAGCATAAGAGAGAACATTGCTTATGGATCTAATAACGGTGATGATGATAATGAAGTTGATGAGTCAGAGATCATAGAGGCGTCAAAATTAGCCATGGCACATGATTTTATTACCGGATTGAAGGACGGTTATGACACGTGGTGTGGCGAGAAGGGGTTACAGCTTTCAGGGGGTCAAAAGCAAAGGATAGCGATTGCAAGGGCTATATTGAAAAATCCAAGAGTGTTGTTATTGGATGAGGCAACTAGTGCCCTTGATATTCAATCGGAGAAAGTTGTTCAGGAAGCACTAGAGAGGGCTATGGTGGAGAGGACTAGCGTGATCGTCGCACATAGGATGTGTACCATAAAGAAATGTGATCTTATTGCTGTGTTGGAGAAGGGCATGGTTGTGGAAAGTGGGACCCACTCTTCTTTGTTGGCAAAAGGAACTGCTGGAGCTTATTGCAACTTTGTTAGGCTTCAGACTGGAACTAATTAG 3495 0.4495 MGIERKKKSSNGSVWSIFMHADTQDWLLMGFGVLGSIGEGSTTPLVLYLSSLIMNNIGTSSTISSTTFVHCINKGYCWTRTSERQAARMRAKYLKAVMRQEVAYFDLNVTSTSDIITGVSNDSLLIQDVISEKVPNLLMNFSLFIGSYIAGFAMLWRLAIVGIPFTVLLVIPGFIYGKTLMGLAKKMREEYNKAGAIAEQAICSIRTVYSYVGENKTINAFSNALQGSLSLGIKQGLVMDHGAKGGTVFSAGAAITVGGLALGAGLTNMKYLSEASSAAERIREVNERVPMIDSDDSDGEILGSVRGEVEFRNVEFAYPTRPETRFYDPLGGEIRFDGVAIDKLQLKWFRSQMGLVSQEPVLFATSIKENILFGKEDATEAEVIEAAKASNAHNFISMLPQGYQTQVGERGTQMSGGQKQRIAIARAIIKKPRMLLLDEATSALDSHSERIVQKALEQVAVGCTTIVVAHRLSTIRNADVIVAMRAGKVVEMGTHDDLLLNHDGLYSSMVRLQQTENSETDESVTAPTTTIHVPSSMSASDTADIHHLCLIHTDDDDNIEKVEEEKEENKNAQATASFWRLLALNLPEWKQAVMGCLNAMVFGAVQPVYTLIMGSMMFVYFDSDDEEMRRKTKEYSVCFVGLFVLSLIVNIGQHYSFAYMGECLTKRIRETMFKKILTFEVSWFDLSENSTGAICSRLANDANVVRSLVGDRIGLVVQTASAVVTAWTLGLVIAWRLAIVMICVQPLMIACFYTKRVLIKTMSKKVAKAQEESSKVAAEAVSNLRTITAFSSQNRILKMLENAQEGPRRENIRQSFYAGIGLACSQGITSCVWALNYWYGGKLVADGYITTKALFQSFMIIVSTARVIADAGSMTSDLAKGADAVCSIFAVLDRTTKIAADDENGHNPEHVTGQIQLHDVHFAYPTRPNVTIFKSFSMKIEAGKSTALIGQSGSGKSTIIGLIARFYDPLRGYVTIDNRDVKSYNLKQLRRHIALVSQEPTLFNGSIRENIAYGSNNGDDDNEVDESEIIEASKLAMAHDFITGLKDGYDTWCGEKGLQLSGGQKQRIAIARAILKNPRVLLLDEATSALDIQSEKVVQEALERAMVERTSVIVAHRMCTIKKCDLIAVLEKGMVVESGTHSSLLAKGTAGAYCNFVRLQTGTN* 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1954 1164 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 599 880 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo04g1954 1164 Gene3D - 325 537 IPR027417 -
Amo04g1954 1164 ProSitePatterns ABC transporters family signature. 414 428 IPR017871 GO:0005524
Amo04g1954 1164 SUPERFAMILY ABC transporter transmembrane region 23 293 IPR036640 GO:0005524|GO:0016021
Amo04g1954 1164 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 237 324 IPR039421 -
Amo04g1954 1164 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 18 238 IPR039421 -
Amo04g1954 1164 Gene3D - 299 324 IPR027417 -
Amo04g1954 1164 ProSitePatterns ABC transporters family signature. 1060 1074 IPR017871 GO:0005524
Amo04g1954 1164 Gene3D - 905 1163 IPR027417 -
Amo04g1954 1164 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 237 324 - -
Amo04g1954 1164 Gene3D ABC transporter type 1, transmembrane domain 240 298 IPR036640 GO:0005524|GO:0016021
Amo04g1954 1164 Gene3D ABC transporter type 1, transmembrane domain 7 239 IPR036640 GO:0005524|GO:0016021
Amo04g1954 1164 CDD ABC_6TM_Pgp_ABCB1_D2_like 582 898 - -
Amo04g1954 1164 CDD ABC_6TM_Pgp_ABCB1_D1_like 29 282 - -
Amo04g1954 1164 Pfam ABC transporter transmembrane region 67 263 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo04g1954 1164 Pfam ABC transporter transmembrane region 595 864 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo04g1954 1164 Pfam ABC transporter 325 442 IPR003439 GO:0005524
Amo04g1954 1164 CDD ABC_MTABC3_MDL1_MDL2 915 1160 - -
Amo04g1954 1164 SMART AAA_5 172 496 IPR003593 -
Amo04g1954 1164 SMART AAA_5 942 1140 IPR003593 -
Amo04g1954 1164 SUPERFAMILY ABC transporter transmembrane region 580 894 IPR036640 GO:0005524|GO:0016021
Amo04g1954 1164 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 915 1157 IPR003439 GO:0005524
Amo04g1954 1164 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 269 511 IPR003439 GO:0005524
Amo04g1954 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 513 IPR027417 -
Amo04g1954 1164 Gene3D ABC transporter type 1, transmembrane domain 538 889 IPR036640 GO:0005524|GO:0016021
Amo04g1954 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 1160 IPR027417 -
Amo04g1954 1164 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 18 238 - -
Amo04g1954 1164 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 76 238 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo04g1954 1164 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 325 1162 - -
Amo04g1954 1164 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 325 1162 IPR039421 -
Amo04g1954 1164 Pfam ABC transporter 934 1088 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1954 Amo-Chr4 87822258 87834861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1954 4 1164 Calmodulin-binding Proteins AT2G36910 38.291 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1954 K05658 - gmx:100807709 1523.45