Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1953 ATGAGGGAAATCAAAGTGCAGAAGCTTGTCCTCAACATCTCCGTTGGCGAGAGTGGCGATCGTCTCACCAAAATGATGAGAGGTCTCTACAAATCAAAGGATTCTAGATTTGGAGATGGCAACCAAATTAGGATGATTAATCTAGTGGGATATTGTTCCTACCTATCTTTAGTGTTTTATGCTTGTACTGAAGTGTTGACTTTTAACAAATACTTTGTGAATTCAGTCAGGAAACATCAAGCAAACTCTCATGCAAAAAAGGGATGGGAACAATTTACTGATGCTGTTATCAAAACAATGTCACAGAAAAGGGAAGGTGTTGTCTTTCTGTTGTGGGGCAACTCTGCTTGGGAGAAATCTAGGTTAATTGATGCAACAAAACATCATATACTTCAAGCTGCACATCCTTCTGGTTTGTCTGTAGATAGAGGCTTCTTTGGCTGCAGGCACTTCTCTCGCACAAACCAGCTTCTGGAGAAAAGGGGAATAGATCCCATAGATTGGCAACTATAA 513 0.4055 MREIKVQKLVLNISVGESGDRLTKMMRGLYKSKDSRFGDGNQIRMINLVGYCSYLSLVFYACTEVLTFNKYFVNSVRKHQANSHAKKGWEQFTDAVIKTMSQKREGVVFLLWGNSAWEKSRLIDATKHHILQAAHPSGLSVDRGFFGCRHFSRTNQLLEKRGIDPIDWQL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1953 170 SUPERFAMILY Uracil-DNA glycosylase-like 57 170 IPR036895 -
Amo04g1953 170 CDD UDG-F1-like 75 168 IPR002043 GO:0004844|GO:0006281|GO:0006284
Amo04g1953 170 Pfam Uracil DNA glycosylase superfamily 15 157 IPR005122 -
Amo04g1953 170 Gene3D - 22 170 IPR036895 -
Amo04g1953 170 PANTHER URACIL-DNA GLYCOSYLASE 64 170 IPR002043 GO:0004844|GO:0006281|GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1953 Amo-Chr4 87777837 87780319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1953 1 24 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 91.667 1.63e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1953 K03648 - gmx:100818241 181.415