Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1951 ATGCTACCTAGGACAAGTATTGATGGTTTTCGTGTTAGTGTGTCAAGTACACCTAGCTGTTCAAGTGGGGGATCGGGACCAGAGGACATCGAGTCTCTAGGTGATCTTTATATATGGGGACAAATTTGGGCAGATGTTTCACCTGATAGTTTTGGGACTCAGCTCCCTCCCATGACTGATGTTTTGCTTCCTAAACCGTTAGAGGCAAATATTGTTCTTGATGTTCAACAGATTGCATCTGGTGTCCACCACATTGCTTTAGTTACAAGGCAAGGTGAAGTTTTCACTTGGGGAGAGGAATCTGGGGGAAGACTTGGTCATGGAATCGATAAAGATTTTGGTCAACCCCATCTTGTTGAGTTCTTGGCGGTTACTAATGTGGATTATGTTGCATGTGGAGAGAACCATACATGTGCTCTGACTACATCAGATGAGCTATATTCTTGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGTTCGGATTCTAGCCATTGGATACCAAAGAGAGTTAGTGGCCCTCTAGAAGGACATCAAGTTATATCTGTTGCGTGTGGCACATGGCATTCGGCATTGGCAACTGCCAATGGAAAACTTTTTACGTTCGGTGATGGAACATTTGGTGTCTTAGGTCATGGAGATAGAGAGAGTGTGTTATATCCAAAGGAAGTGCAGTTATTAAGTGGATTGAGGACTCTTAAAGTTGCATGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTAACACTTCAGTCTAGTTCAAATGTTTCATCAAGGAAGCTCTTCACTTGGGGTGATGGTGATAAGTATCGTTTGGGGCATGGAAACAAGGAAACATACCTTCAACCGACTTGTGTCTCATCTCTTATAGAATTAAATTTCCACCAGATAGCATGTGGAAACACTATGACTGTTGCCCTCACTACATCGGGTCATATTTTCACTATGGGAGGCACTGAACATGGTCAACTAGGAAATCCTTTGTCCGATGGAAAAGTACCAATGCTAGTACAAGATAAGTTGGTAGGTGAGTATGTTGAGGAAATATCATGTGGATCTCATCATGTGGCTGTATTGACATCAAGAAGTGAACTATATACATGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACACAGAAGATAGGAAGGGTCCAACAATAGTGGAAGCCTTGAAAGAAAGGCATGTAAAAAACATTTCGTGTGGGTCGAAGTTTACAGCTTGCATATGCATCCATAAATGGGTCTCGGGAGTTGACCAATCTAGTTGTACCGCATGTAGGCAACCATTTGGATTTACTAGAAAAAGGCACAATTGTTATAATTGTGGGTTAGTGCATTGCCATGGTTGTAGTTCAAAAAAGGCATTGAGGGCAGCGTTGGCTCCAACACCCGGAAAACCTCATCGTGTGTGTGATTCTTGTTATACTAAGATTAAAAATGTTGAGTCGAATTCTGGTGCCATTTTTAATAGGAGAGCTACTACTCCACCTCGTACTTCTATAGATGGAAGGGAAAGATTTACCCTGGGAGAAATAAGATCTTCAAGAACTCTCTTCCCTCTCTCAAGGATTCACAAGACTACTACAGAGCAAGTTGTTCAGGTTCCATCACTAGTGCAATTGAAAGATGTTGCATTCCCAAGTTCAACAGGTTCAATAATGCAAAATCTTTTGAAGCCTACCATCGCTGCCATACCTCCAACTCCAAGTCCACCACCAACTCCACCACTCATTTCAAGGCCCGCATCCCCGTATGCAAGAAGGCCAAGCCCTACGCGTTCCGGCGCTGGTGGATTCTCTAGAAGTCTTATTGATAGTTTGAGGAAAACAAATGAGCTTAAGAATCAAGAAGTGTCAAAATTGCAGAAACAAATTCAAAGTTTGAAACAGAAAAGTGACATGAAAGATGTGGAAAATCAAAAGCTTCGCCAACATATTAAGGAAGCTACAACATTGGCAGCAGATGAGTCTTCTAAGCATAAAGCAATGCTAGAAATTTTTGAGTGCACTATTATTCAGTTGAAGCAAATGGCTGAGAAGTTGCCACCAGAGATTTCAGAAACTGAAAATTTGAGAATTGCACTTACTCAAGCTGAAGATTTTCTGAAAGAAAACTCGACATCTGAAACATTTTCCGCGCCATCAATATCAGAGTCTACTCGACAAAATGCACCTGATCCTGCCACAGATATTGGGGATTCAAAAATGCAAGAGCACAATACAGAAGAAAATCATGAAGCGGCGGCTTCGGACCCATCTCATGATGAGGGGAATGTCCTTCAAGAAAGAAATGGATCATCTGTATCCGATAATAGAACAGCAGTGCAACCACAAAGCTCCGAGGAGACGTCAAGGTTGGCAAGAGATGGAGAAACACAAGTTATTGAACAATTTGAGCCTGGTGTTTACGTGACACTAATAGTAAGGCCTAATGGTGTCAAAATTTTCAGGAGAGTTAGATTCAGCAAGCGAAGGTTTCATGAGCAACAAGCAGAAGAATGGTGGAACATAAATAAAGAGAGGGTGCTTCAGAGATATGGTCAACAAGCTAGAAGTGATGCTAATGCATCATCTAGCACCCCGGCACCACCTACTGAAGAAAATATTGAGGCAGCACCTACCTAG 2637 0.424 MLPRTSIDGFRVSVSSTPSCSSGGSGPEDIESLGDLYIWGQIWADVSPDSFGTQLPPMTDVLLPKPLEANIVLDVQQIASGVHHIALVTRQGEVFTWGEESGGRLGHGIDKDFGQPHLVEFLAVTNVDYVACGENHTCALTTSDELYSWGDGAYNVGLLGHGSDSSHWIPKRVSGPLEGHQVISVACGTWHSALATANGKLFTFGDGTFGVLGHGDRESVLYPKEVQLLSGLRTLKVACGVWHTAAIVEVTLQSSSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSSLIELNFHQIACGNTMTVALTTSGHIFTMGGTEHGQLGNPLSDGKVPMLVQDKLVGEYVEEISCGSHHVAVLTSRSELYTWGKGANGRLGHGDTEDRKGPTIVEALKERHVKNISCGSKFTACICIHKWVSGVDQSSCTACRQPFGFTRKRHNCYNCGLVHCHGCSSKKALRAALAPTPGKPHRVCDSCYTKIKNVESNSGAIFNRRATTPPRTSIDGRERFTLGEIRSSRTLFPLSRIHKTTTEQVVQVPSLVQLKDVAFPSSTGSIMQNLLKPTIAAIPPTPSPPPTPPLISRPASPYARRPSPTRSGAGGFSRSLIDSLRKTNELKNQEVSKLQKQIQSLKQKSDMKDVENQKLRQHIKEATTLAADESSKHKAMLEIFECTIIQLKQMAEKLPPEISETENLRIALTQAEDFLKENSTSETFSAPSISESTRQNAPDPATDIGDSKMQEHNTEENHEAAASDPSHDEGNVLQERNGSSVSDNRTAVQPQSSEETSRLARDGETQVIEQFEPGVYVTLIVRPNGVKIFRRVRFSKRRFHEQQAEEWWNINKERVLQRYGQQARSDANASSSTPAPPTEENIEAAPT* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1951 878 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 78 88 IPR000408 -
Amo04g1951 878 MobiDBLite consensus disorder prediction 736 762 - -
Amo04g1951 878 Coils Coil 608 635 - -
Amo04g1951 878 Pfam Transcription factor regulating root and shoot growth via Pin3 796 850 IPR013591 -
Amo04g1951 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 199 250 IPR000408 -
Amo04g1951 878 MobiDBLite consensus disorder prediction 763 787 - -
Amo04g1951 878 MobiDBLite consensus disorder prediction 708 731 - -
Amo04g1951 878 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
Amo04g1951 878 MobiDBLite consensus disorder prediction 708 795 - -
Amo04g1951 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 143 IPR000408 -
Amo04g1951 878 Pfam Regulator of chromosome condensation (RCC1) repeat 92 140 IPR000408 -
Amo04g1951 878 Pfam Regulator of chromosome condensation (RCC1) repeat 312 361 IPR000408 -
Amo04g1951 878 Pfam Regulator of chromosome condensation (RCC1) repeat 144 194 IPR000408 -
Amo04g1951 878 Pfam Regulator of chromosome condensation (RCC1) repeat 263 309 IPR000408 -
Amo04g1951 878 Pfam Regulator of chromosome condensation (RCC1) repeat 198 247 IPR000408 -
Amo04g1951 878 Pfam Regulator of chromosome condensation (RCC1) repeat 366 413 IPR000408 -
Amo04g1951 878 Gene3D - 156 418 IPR009091 -
Amo04g1951 878 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 3 850 - -
Amo04g1951 878 SUPERFAMILY FYVE/PHD zinc finger 417 489 IPR011011 -
Amo04g1951 878 Pfam FYVE zinc finger 417 483 IPR000306 GO:0046872
Amo04g1951 878 Gene3D - 28 155 IPR009091 -
Amo04g1951 878 ProSiteProfiles BRX domain profile. 796 851 IPR013591 -
Amo04g1951 878 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 421 483 IPR017455 -
Amo04g1951 878 SMART fyve_4 415 484 IPR000306 GO:0046872
Amo04g1951 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 144 198 IPR000408 -
Amo04g1951 878 CDD FYVE_like_SF 426 479 - -
Amo04g1951 878 SUPERFAMILY RCC1/BLIP-II 33 418 IPR009091 -
Amo04g1951 878 MobiDBLite consensus disorder prediction 568 586 - -
Amo04g1951 878 MobiDBLite consensus disorder prediction 850 878 - -
Amo04g1951 878 MobiDBLite consensus disorder prediction 850 869 - -
Amo04g1951 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Amo04g1951 878 MobiDBLite consensus disorder prediction 568 605 - -
Amo04g1951 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 492 IPR013083 -
Amo04g1951 878 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 3 850 - -
Amo04g1951 878 PRINTS Chromosome condensation regulator RCC1 signature 360 381 IPR000408 -
Amo04g1951 878 PRINTS Chromosome condensation regulator RCC1 signature 185 201 IPR000408 -
Amo04g1951 878 PRINTS Chromosome condensation regulator RCC1 signature 302 320 IPR000408 -
Amo04g1951 878 PRINTS Chromosome condensation regulator RCC1 signature 74 87 IPR000408 -
Amo04g1951 878 PRINTS Chromosome condensation regulator RCC1 signature 144 160 IPR000408 -
Amo04g1951 878 PRINTS Chromosome condensation regulator RCC1 signature 201 215 IPR000408 -
Amo04g1951 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Amo04g1951 878 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 312 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1951 Amo-Chr4 87739113 87742625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1951 757 853 Major Intrinsic Protein MIP AT1G31880 30.928 9.77e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1951 - - ahf:112742992 1702.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2979 14 126599115 126602627 Amo04g1951 04 87739113 87742625 hybridization