Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1891 ATGTGCAGCAGTAGCGTCAGGGCACCAATGGAGAATAATAATAATTACAAGCATCAGGGTGATTTAACCGATATACTCCGTGGAGGACCATACGGCGGTGCTGCCACTGCTTCCGATGAACCGCCCTCTTCATATCACTGGCAACAGCAACTTGAAAACGATACCACCGCCTGCTACTTTGGGGATCCATTTTCAACCATGAGAGATCCTTTCCTTCACCAGCTCCACATCCCTCCTACTTCTTCCTCCTCTTACTTCGAAGAACCACCGCTACCACCGCCACCGCTGCCGCCGCCGCCTACCTTGCCTACTCCATGTTATAACAGTTATGGTGGTGCACACCTTCAACATGACATGAGATCTTCCTCCTCCTCTTCTTCTTCCTCTTCTTCTTCAATTAGCTGCAACAACATATTCTCGAACATGATTCAGATCTCTCCCAGCACTAATAACACTTCTTCTTCTTGTTCCTCTTCGTCTTCTTCAAAATTAGCCATCTCTTCCTCTTCTTCTTCTCCTCCTTCTATGCTCTCAAATGTTAACGCCATGGTCAATGCAACATCAATCCCCTCCAACAAGCAAGATTGCCATCTTCTCGACAACGCTTCCGCACTTCAGATCTCATCTCCGCGCAATCCCGCTCTTAAGCGCAGGAAGAATCAGGCGAAAAAGGTGGTGTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTTGTTCCTTCAGATTTGTGGGCTTGGAGGAAATACGGTCAGAAACCTATCAAAGGTTCACCTTATCCAAGGGGATATTATAGATGCAGCAGCTCAAAGGGTTGTTCAGCAAGGAAACAAGTAGAGAGGAGCAGAACAGACCCAAACATGCTTGTTATTACTTACACTTCAGAGCATAATCATCCATGGCCTACTCAGAGAAACGCTCTTGCTGGTTCAACAAGGTCTCAGCCATCCAAGAACAACACCAATGCTAATATTGCTTCTTCAAAGAATTCAGAAACCTCAAAGGTTTCTGGTAATAATAACAAGCCAAAGGAGGAGAATAATAATCAGCAGCATGAGAGAGGCAACAACAACAGTCAAGGAGGGAGTGCTTCAGTAGTGAAGGAAGAGATGGATCATCATCATCATAGCAATCATGATCTTGAGCTTGAGTTGGATAATGATGAAGAATTCAGTGATGGACTTTCATACAAGCCATCAATGATTGAAGAGGGTAGTAATAACAATAACCAATCTTCTGAGGATTTCTTTGCAGATTTGGGSGAAATTGAAGCTGATCCATTGAACCTGTTGTTCAGTAGTCATCAAGGTTTCAATGCAGGTGGTGGTGGTGGTGGTGGTGGTGATAATCAAAGGGAATCCAAGGCCTTAGATCCATTCAATCTCTTTGATAATTGGTCTTCAGGAGACACTAATAACAACAACTCATCATTTGAAGAACCTAATAATAAGGGAAGGTTATAA 1473 0.4426 MCSSSVRAPMENNNNYKHQGDLTDILRGGPYGGAATASDEPPSSYHWQQQLENDTTACYFGDPFSTMRDPFLHQLHIPPTSSSSYFEEPPLPPPPLPPPPTLPTPCYNSYGGAHLQHDMRSSSSSSSSSSSSISCNNIFSNMIQISPSTNNTSSSCSSSSSSKLAISSSSSSPPSMLSNVNAMVNATSIPSNKQDCHLLDNASALQISSPRNPALKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNTNANIASSKNSETSKVSGNNNKPKEENNNQQHERGNNNSQGGSASVVKEEMDHHHHSNHDLELELDNDEEFSDGLSYKPSMIEEGSNNNNQSSEDFFADLGEIEADPLNLLFSSHQGFNAGGGGGGGGDNQRESKALDPFNLFDNWSSGDTNNNNSSFEEPNNKGRL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1891 490 MobiDBLite consensus disorder prediction 442 490 - -
Amo04g1891 490 MobiDBLite consensus disorder prediction 296 348 - -
Amo04g1891 490 MobiDBLite consensus disorder prediction 370 386 - -
Amo04g1891 490 MobiDBLite consensus disorder prediction 1 20 - -
Amo04g1891 490 Pfam WRKY DNA -binding domain 246 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g1891 490 MobiDBLite consensus disorder prediction 270 289 - -
Amo04g1891 490 MobiDBLite consensus disorder prediction 150 175 - -
Amo04g1891 490 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 19 468 IPR044810 GO:0003700
Amo04g1891 490 MobiDBLite consensus disorder prediction 1 45 - -
Amo04g1891 490 MobiDBLite consensus disorder prediction 115 129 - -
Amo04g1891 490 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g1891 490 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 19 468 - -
Amo04g1891 490 MobiDBLite consensus disorder prediction 467 490 - -
Amo04g1891 490 MobiDBLite consensus disorder prediction 85 105 - -
Amo04g1891 490 MobiDBLite consensus disorder prediction 296 416 - -
Amo04g1891 490 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g1891 490 Gene3D WRKY domain 218 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g1891 490 MobiDBLite consensus disorder prediction 78 129 - -
Amo04g1891 490 SUPERFAMILY WRKY DNA-binding domain 242 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1891 Amo-Chr4 86763276 86767429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1891 1 478 WRKY Transcription Factor Family AT1G30650 40.726 2.66e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo04g1891 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1891 - - gmx:100805707 413.305