Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1870 TCACTTTTTGGTTTGATAAATGTTGCAGACTTTGGTCTTTCTTTGTATGAGTGGTTAGGCATAGCTGAAGAAGATGCTTCGCTAGTCGAAAGGCGAGTAAAGCATCTTCTTCCTTCTTTGCCTCCAAACGCAATTATTCTAGAATCGTCTGGAATAGTTGCACATTCACAAAATCCAGTCATTTCCATAATCCCAACCAATAATCCTGATGTGGTCGTTGCTAACAACAGCAACACCAATAACACAGTTGGGCTTAAACGTTCAGCGACATCTATTGTCAGTGAAAATGTAAATCTTCGAGGCGATGAACTAGATGACGAACAAAATAATATTACAATTAGGTTGAAACTCCGAGAATCGACGATGGCATTGATTGCAGCTACCATGAATATGAATAATAAAAGGAATAAAAATAATCTTTCGAAATTTACTTTCTTGACAAAAAGCGAAACTGAAAACCTTGAAGATGGATATAAATGGCGCAAGTATGGCAAAAAATCACTCAAAAAAAGCCCATTCCAAAGGAACTACTATCGTTGCACTACAATTGGTTGCAATGCGAAAAAGAGAGTGGAGAGGTGCCTAAATGACCCCACCTATGCACTAACTACCTATGAAGGTTTTCACACTCATGATTTGCCACCAATCCTCCCTCCTCCGTCAAGATCTTTCGGTCTCTACAACAACTCCACCCTTAGTTCCATACTTAGTAGAGGCAGAATAGCACCTCAATATCATCATCATCGTCATCAACCAACATCTCTATAG 768 0.3919 SLFGLINVADFGLSLYEWLGIAEEDASLVERRVKHLLPSLPPNAIILESSGIVAHSQNPVISIIPTNNPDVVVANNSNTNNTVGLKRSATSIVSENVNLRGDELDDEQNNITIRLKLRESTMALIAATMNMNNKRNKNNLSKFTFLTKSETENLEDGYKWRKYGKKSLKKSPFQRNYYRCTTIGCNAKKRVERCLNDPTYALTTYEGFHTHDLPPILPPPSRSFGLYNNSTLSSILSRGRIAPQYHHHRHQPTSL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1870 255 SUPERFAMILY WRKY DNA-binding domain 147 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g1870 255 Gene3D WRKY domain 139 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g1870 255 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g1870 255 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g1870 255 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 68 224 - -
Amo04g1870 255 ProSiteProfiles WRKY domain profile. 149 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g1870 255 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 224 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1870 Amo-Chr4 85828676 85830075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1870 132 239 WRKY Transcription Factor Family AT2G47260 50.926 4.03e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo04g1870 WRKY 4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1870 - - aip:107636875 419.468