Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1824 ATGAGCGTTAATCTCTTTCTCTGTTTCTTCTCTTTCTCGTTCTTTTTCGTCTTTTTAATACAAACCGTTTTTTCTCTCTCCCCCGACGGCGTTGCACTTCTCACTCTAAAATCCGCCGTGGACCCCGCCGGCGCCGCTGCGCTTGCCAATTGGAACGACGGAGACGCCACTCCGTGCGGATGGTCCGGGGTCAGCTGTAGTAACATCTCCGGGGACCCTGATCCCCGCGTCGTCGGCGTCTCCCTCGCCGGAAGGGGCCTCCGCGGCTACCTCCCATCGGAGCTCGGCACACTTCTCTACCTCCGCCGCCTCAATCTCCACTCCAACGCCTTCCGCGGCTCCATCCCCTCCCAGCTCTTTAACGCCACCGCGCTCCGATCCCTCTACCTCCACTCCAACAACCTCTCCGGCGACCTCCCTCCCTCCCTCTTCTCCCTCCGCCGCCTCCAGAACCTCGACCTCTCCGATAACTCCCTCTCCGGCTCAATTCCAAACTCTCTCCGCAACTGCTCACAGATCCAGCGCCTTGTCCTCGCCAGGAACAGATTCTCCGGCAAGATTCCGGCGACACCGTGGCCGGAGCTCCGAGAAATCATTCAGCTCGACCTCTCCGCGAACCTCCTAGAAGGTCCAATCCCGGACCAGATCGGAGAGCTTCAATCCCTCACCGGAACCTTAAACCTCTCGTTCAATCACCTCTCCGGCAACGTTCCAGAATCTCTCGGGAAACTTCCGGTGACGGTTAGCTTCGATTTGCGAAACAACAATCTCTCCGGCGAGATTCCCCAAACAGGATCGTTTTCAAACCAAGGCCCCACGGCGTTCCTCAACAACCCTAACCTCTGCGGTTTCCCGCTTCAAAAACCGTGTTCCGGTTCGGCACAGAGCGAACCGGGATCAAGCCCTGGTTCAAAAAGGGAACGGTCCGGATCACGGTCTAATAAAGGGCTAAGCCCCGGTTTAATTGTTCTAATCTCAGTAGCTGATGCCGCTGGCGTTGCTCTAATTGGACTCATAATTGTTTACGTTTATTGGAAAAAGAAAGACGGTTGCAACGGGTGTAGTTGTACCGGTAAGGCCAAGTTTGGCGGTGGCGAAAACGGGAAAACGCGTTTTTTGTGCTGTTCTTTGCCATGCATGAACGTTGGGGTGCTGAAGAGTGATGATTCTGAATTGGAGGAAGGTGAGAAAGGGGAGCGCGGAAGAGGGGAAGGGGAACTGGTGGCGATTGATAAGGGATTTAACTTTGAGCTTGATGAGTTGTTGAGGGCTTCAGCTTATGTTCTTGGGAAGAGTGGGTTGGGGATAGTGTATAAGGTTGTGCTTGGGAATGGGGTTCCTGTGGCTGTGAGGAGGCTTGGGGAGGGTGGTGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTCAGGCTATTGGGAAGGTCAAGCACCCTAATGTTGTGAAGCTAAGGGCTTATTATTGGGCACCTGATGAGAAGCTCTTGATCAGTGATTTCATCTCTAATGGCAATTTGACCACCGCTCTTAGAGGGAGAAATGGTCAACCAACTATGAACCTTCCATGGTCAACCAGGCTGAGAATTGCCAAAGGAGCAGCCAGGGGTTTGGCCTATCTCCATGAATGCAGTCCTAGAAAATTTGTTCATGGTGACATCAAGCCCTCCAATATTCTCCTTGATGGGGACTTCCAACCCCGAATTTCTGATTTCGGCCTTAACCGGTTGATCAGCATCACTGGCAATAACCCCTCCAATGGTGGCTTTATGGGAGGAGCTCTTCCTTACTTTAAGCCATCACAAACAGAACATACCAACAAATACAAGGCCCCTGAGGCCAGAGTTCCAGGCAGCAGACCAACCCAGAAATGGGATGTATATTCATTTGGAGTCGTGTTGCTCGAATTGCTTACTGGGAAGTCCCCTGATTCTACTCCTGCCCCATCAACTTCTATGGAAGTTCCTGATATGGTGAGGTGGGTGAGGAAAGGGTTTGAACAAGAAAGTCCGCTATCCGAAATGGTTGATCCTCCTTTGCTTCAAGAAGTTCATGCCAAAAAGGAGGTACTGGCTGTGTTTCATGTAGCATTGTCATGCACTGAGGGAGACCCTGAAGTCAGGCCTAGAATGAAAACTGTGTCTGAGAATCTAGAAAAGATTGGATCATAG 2163 0.5201 MSVNLFLCFFSFSFFFVFLIQTVFSLSPDGVALLTLKSAVDPAGAAALANWNDGDATPCGWSGVSCSNISGDPDPRVVGVSLAGRGLRGYLPSELGTLLYLRRLNLHSNAFRGSIPSQLFNATALRSLYLHSNNLSGDLPPSLFSLRRLQNLDLSDNSLSGSIPNSLRNCSQIQRLVLARNRFSGKIPATPWPELREIIQLDLSANLLEGPIPDQIGELQSLTGTLNLSFNHLSGNVPESLGKLPVTVSFDLRNNNLSGEIPQTGSFSNQGPTAFLNNPNLCGFPLQKPCSGSAQSEPGSSPGSKRERSGSRSNKGLSPGLIVLISVADAAGVALIGLIIVYVYWKKKDGCNGCSCTGKAKFGGGENGKTRFLCCSLPCMNVGVLKSDDSELEEGEKGERGRGEGELVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNVVKLRAYYWAPDEKLLISDFISNGNLTTALRGRNGQPTMNLPWSTRLRIAKGAARGLAYLHECSPRKFVHGDIKPSNILLDGDFQPRISDFGLNRLISITGNNPSNGGFMGGALPYFKPSQTEHTNKYKAPEARVPGSRPTQKWDVYSFGVVLLELLTGKSPDSTPAPSTSMEVPDMVRWVRKGFEQESPLSEMVDPPLLQEVHAKKEVLAVFHVALSCTEGDPEVRPRMKTVSENLEKIGS* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1824 720 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515
Amo04g1824 720 Gene3D Transferase(Phosphotransferase) domain 1 499 720 - -
Amo04g1824 720 SMART serkin_6 427 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1824 720 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 719 - -
Amo04g1824 720 Pfam Protein kinase domain 428 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1824 720 CDD STKc_IRAK 429 718 - -
Amo04g1824 720 ProSiteProfiles Leucine-rich repeat profile. 148 170 IPR001611 GO:0005515
Amo04g1824 720 ProSiteProfiles Protein kinase domain profile. 423 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1824 720 MobiDBLite consensus disorder prediction 289 314 - -
Amo04g1824 720 Gene3D Phosphorylase Kinase; domain 1 408 498 - -
Amo04g1824 720 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Amo04g1824 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Amo04g1824 720 SUPERFAMILY Protein kinase-like (PK-like) 428 715 IPR011009 -
Amo04g1824 720 MobiDBLite consensus disorder prediction 289 307 - -
Amo04g1824 720 Pfam DNA binding protein S1FA 313 347 IPR006779 GO:0003677|GO:0005634|GO:0006355
Amo04g1824 720 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 3 719 - -
Amo04g1824 720 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Amo04g1824 720 Gene3D Ribonuclease Inhibitor 28 191 IPR032675 -
Amo04g1824 720 SUPERFAMILY L domain-like 29 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1824 Amo-Chr4 84834380 84839665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1824 24 718 Receptor kinase-like Gene Family AT1G67510 69.437 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo04g1824 Pkinase 3e-32 CL0016
TF S1Fa-like Amo04g1824 Pkinase 3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1824 - - gmx:100795021 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g1824 04 84834380 84839665 Amo12g2437 12 107025438 107029750 PCT