Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1807 ATGGCTTCTTCTTCAGCAAGAAGAGAGAAAGTGCCACTAACCGTGACACTACTCACCTTCTTGTTGATTCTTCTCCTTGGAAACTTTACTTCTATGGTCTCTGCTTCTGGCAATTGCGGTTCGGAAGGCTCAACATGCCTCGTGCCTTCTGAGTTCGTCGGTGTTGTTAAGGAAGTTATTGGGCTCTTGGGGAATGTTGGTTCCATCCTGTCCAAGTTTACTGGTGGTTTTGGTAATTTCCATCTCACAAACGCCATTCTTGACGGTCTTGATTTGTTGGACATGTCCTCCGATGAACTTAATTTGTTTCTCTCCGTCATTCAAAATCCCAAAGGGAGAAACAACTTAGAATTGGATTTAGCGACATGGCTAAGTGCTGTCCTAGCAAATTTAGACACATGCCTCGATGGATTCGAAGGCACAAATAGTATCATCAAAGGGTTAATCTCCCCTGGCCTTAGACTAGTGACATCGCCAGTAACGAATCTTCTCGCAAAAGTTGATGTGTCCCAGAATGATTTCTTCGAAGATGCTGCGGCCGGCGCCGGCGAGGGCCGATTTCCTTCGTGGGTGAAGCCGAGGGAGAGAAAGCTTCTGCAAGCAAATAGGGTGGTTCCGAACGCCGTGGTAGCTGCAGATGGGAGTGGAAACTTTAGAAGAATCATGGATGCGGTTATGGCAGCGCCGAATAATAGTAATACGAGGTTTGTGATTTACGTGAAGAGAGGTGTTTACAATGAGTACGTAGAGATTAATAAGAATAAGAGGAATATCATGATGATCGGAGATGGTATCGGTGCCACTATTATCACCGGCAACCGGAATTATGTCGACGGCTGGACAACTTTTCGATCGGCCACCTTTGTTGTAGTTGGAGAAGGGTTCATAGCACGAGACATTACTTTTCAAAACACAGCAGGGCCAGCGAAGAAGCAAGCCGTGGCACTAAGAACCGATTCTGACTTCTCCGTGTTTTTCCGTTGTGGAATCTTCGGCTACCAAGACACCCTTTACGTTCACTCAATGCGTCAATTCTTCAGAGAGTGCACCATTTCCGGTACAGTCGATTTCATCTTCGGCTATGGAACTGCCGTCTTCCAAAAATGCAACATACTTATCAAAAAAGGGTCACCGGACCAAAAGAACGCAATCACTGCACACGGCAGAGAAGATCCTAACGAACCAACAGGGTTCTCGTTGCAATTCTGCAACATAATCGCTGACTCTGACCTCGTTCCGTTTGTTAAGATGACGGAATCTTTCTTGGGGAGGCCATGGAAAAAGTATTCAAGAACAGTTTTTATGCAAAATTATATAAGCGACGTTATAAGCCCGCTAGGTTGGACACCATGGAATGGGAGCATTGGGTTGGACACTCTGTATTATGCTGAGTATATGAACACTGGTCCCGGTGCCGGTGTAGCTAACAGAGTGAAATGGCCTGGATACCGTGTTTTGAAAACCTCCCGTGAAGCTAGTAATTTTACTGTGGCAAACTTCATTCAAGGGAACTCTTGGTTGCCTTCAACTGGTGTCGCATTTTCAGCTGGATTATCTCTTAATTAA 1566 0.4559 MASSSARREKVPLTVTLLTFLLILLLGNFTSMVSASGNCGSEGSTCLVPSEFVGVVKEVIGLLGNVGSILSKFTGGFGNFHLTNAILDGLDLLDMSSDELNLFLSVIQNPKGRNNLELDLATWLSAVLANLDTCLDGFEGTNSIIKGLISPGLRLVTSPVTNLLAKVDVSQNDFFEDAAAGAGEGRFPSWVKPRERKLLQANRVVPNAVVAADGSGNFRRIMDAVMAAPNNSNTRFVIYVKRGVYNEYVEINKNKRNIMMIGDGIGATIITGNRNYVDGWTTFRSATFVVVGEGFIARDITFQNTAGPAKKQAVALRTDSDFSVFFRCGIFGYQDTLYVHSMRQFFRECTISGTVDFIFGYGTAVFQKCNILIKKGSPDQKNAITAHGREDPNEPTGFSLQFCNIIADSDLVPFVKMTESFLGRPWKKYSRTVFMQNYISDVISPLGWTPWNGSIGLDTLYYAEYMNTGPGAGVANRVKWPGYRVLKTSREASNFTVANFIQGNSWLPSTGVAFSAGLSLN* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1807 521 Pfam Pectinesterase 207 504 IPR000070 GO:0030599|GO:0042545
Amo04g1807 521 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Amo04g1807 521 SUPERFAMILY Pectin lyase-like 207 517 IPR011050 -
Amo04g1807 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 165 IPR035513 -
Amo04g1807 521 Pfam Plant invertase/pectin methylesterase inhibitor 85 146 IPR006501 GO:0004857
Amo04g1807 521 Gene3D - 201 518 IPR012334 -
Amo04g1807 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 169 IPR035513 -
Amo04g1807 521 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Amo04g1807 521 PANTHER PECTINESTERASE 47 518 - -
Amo04g1807 521 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 47 518 - -
Amo04g1807 521 SMART PMEI_2 30 166 IPR006501 GO:0004857
Amo04g1807 521 CDD PMEI-like_4 32 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1807 Amo-Chr4 84510430 84513281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1807 20 518 Carbohydrate Esterase AT3G43270 57.310 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1807 K01051 - gmx:100814987 615.535