Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1775 ATGATGATGATGATGAAGATGGTGGAAGAAGAAAGCCATGGATCAGAATGTTCTAAGACAAGAAGCCCTTGCAATGATGATAATAATAATAATGAAGATGATGGCTATTGTGAAGAAGAGAGTGAAACCAATAATGAAGAAGAAGTTGAAGAAGAAGATGAGAGTAGTTATAAGAAACAATACAAGAACAACAATGGTGGTGGTGGAGGGTGTTCAAGCAACAGCACAGTGGAAGAGAATAACGAGAAGAAGAGTTCATCAACATCAGTAAGACCTTACGTTAGATCCAAGTTGCCAAGGTTGCGTTGGACCCCTGATCTTCATCTTCGATTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACACCAAAATTGGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTAGAGGACACAAATCATCAAGTAGTAATGGCTGATCATCATAGGCTTCTAATAGAAAATGGAGAGAGAAATAATGTTTATAATCTCAGCCAGCTTCCCATGCTTCAAAGTTATAGATATGGTCATGGATATGGAGTTGCTTCCGCTACTCTTGGTGTCTATGAAAACATGGCGCATAGGAACGCCAATTTGACTCATCATCATAGCATTTTTTCTCATAATTTTGGGGAACAATCATCAAGCCATCCTCATCCTCCTCATCATCATCATCATGAACAAAAAGATCATCAGTTTCTATCATTTGGAAATGGCCAAGGATCTTTATGCACGAATACTAATAACAATAGATTAATAAGCAGTCACATTGAAAAGCCTAGAGCTCAAGATTTCATGCCTACTAATACTAATAATAATTTGAAAAGAAAGGCTTCAGAAAATAGTGATATTGATTTGGACTTGTCTCTTAAATTAAATTCAAGGGTGGTTTTTAATGATGAGAAGCAATTAGGAAGAAGAAGCAGCATGATGATGATGATGATGATGGAGGAAGAAGAACACCATGAAGTTGTAGTTAATAGCAATCTATCACTCTCTTTGCACTCTCATCAATCCTCATCACCACAAGATCATTGTAATAAGGTGAAAGGTAAAAAGGCCACTACAAATTTGGATCTAAGAATCTGA 1146 0.3691 MMMMMKMVEEESHGSECSKTRSPCNDDNNNNEDDGYCEEESETNNEEEVEEEDESSYKKQYKNNNGGGGGCSSNSTVEENNEKKSSSTSVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVEDTNHQVVMADHHRLLIENGERNNVYNLSQLPMLQSYRYGHGYGVASATLGVYENMAHRNANLTHHHSIFSHNFGEQSSSHPHPPHHHHHEQKDHQFLSFGNGQGSLCTNTNNNRLISSHIEKPRAQDFMPTNTNNNLKRKASENSDIDLDLSLKLNSRVVFNDEKQLGRRSSMMMMMMMEEEEHHEVVVNSNLSLSLHSHQSSSPQDHCNKVKGKKATTNLDLRI* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1775 381 MobiDBLite consensus disorder prediction 353 381 - -
Amo04g1775 381 Pfam Myb-like DNA-binding domain 101 151 IPR001005 -
Amo04g1775 381 MobiDBLite consensus disorder prediction 60 91 - -
Amo04g1775 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 155 IPR017930 -
Amo04g1775 381 Gene3D - 98 155 - -
Amo04g1775 381 MobiDBLite consensus disorder prediction 227 266 - -
Amo04g1775 381 PANTHER - 13 211 - -
Amo04g1775 381 PANTHER - 291 378 - -
Amo04g1775 381 MobiDBLite consensus disorder prediction 365 381 - -
Amo04g1775 381 MobiDBLite consensus disorder prediction 276 295 - -
Amo04g1775 381 MobiDBLite consensus disorder prediction 252 266 - -
Amo04g1775 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 291 378 IPR044848 GO:0003700
Amo04g1775 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 13 211 IPR044848 GO:0003700
Amo04g1775 381 MobiDBLite consensus disorder prediction 1 91 - -
Amo04g1775 381 MobiDBLite consensus disorder prediction 31 53 - -
Amo04g1775 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 99 154 IPR006447 GO:0003677
Amo04g1775 381 SUPERFAMILY Homeodomain-like 98 153 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1775 Amo-Chr4 82942444 82944209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1775 69 160 G2-like Transcription Factor Family AT2G42660 62.857 3.56e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo04g1775 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1775 - - adu:107484994 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2799 14 120789967 120792419 Amo04g1775 04 82942444 82944209 hybridization