Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1771 ATGAGGAAACTAAGATTTAATCTAAAGGGACTAGGGCCGCTTCCTCCGACTGGTGGGAGTGGCGGAATAAGGAGAAACGACAATGCATCAAAATCTTTTGGGGTAGGAATGAGAAGGGGATCGAATGGGCTAAGAGTACTTGGGAGATCCCTGAAAAGTGGAGTGACGTGGGCATCAGTGTTTCCGGAAGATCTTAAAGTGTCTGAGAGAAAAATATTTGACCCTCAAGACAAGACTCTTCTGCAGTGGAATAAATTCTTTCAAGTTTTGTGTATCATATCTGTATCTTTTGATCCCCTTTTCTTTTATCTCCCATATTTCAATCACAAATCATTCTGTCTCGCCATAGACAGCAGCCTGGCAAGCTATGCAGTTACACTCAGAACAATCTTCGATGCTATCTACATCCTTCGCATAAGTTTCCAGTTTCGCACTGCTTTCATTGCGCCTTCTTCTCGTGTCTTTGGACGAGGTGAACTCGTCATAGATCCTGCAGAGATTGCTAAGAGATATTTGCAACGTTACTTCATTGTTGACTTCCTCTCTGTGTTGCCTTTGCCACAGATTGTCGTGTGGAGATACCTTCATGATCCAGCGCGCACAAAGGTATTAGCTACAAAAACGCAACTGTTGAACATTGTCATCCTCCAATATTTTCCAAGATTTCTACGCTTTCTACCTTTGGCCTCAGAGATTAGCAAGACAGCAGGTGTTTTTTCGGAGAATACTTTGGTCGGCGCCGCATATTACTTGACCTGGTACATGCTTGGTAGCCACATAACTGGGTCTGTATGGTACTTATTAGCTGTAGAACGTAATGACACGTGCTGGAGGAATGCTTGCATGGAGGAAGAGCGATGTTTCACGCATTTCTTGTACTGTGGGGGTTCAAATAAGCGTGCTACTGGCTATGAAGAATGGAGAAAGATTAGCCCAAAGATTCTTAAGGATAAGTGTTCCGCTGATGATGACGACGCCCCATTTGACTATGGAATTTTCAATCAAGCCATAACATCTAATATTGTTGCATCAATCAATTTCTTTCCTAAACTATGTTACTGTTTATGGTGGGGTGTCCAAAACATAAGCACACTTGGTCAAGGGCTTCAAGCTAGCACCTACAACTTTCTTCAATCGATGTCTGTCCGTCTAGAGGAAATGAGGATCAGAAGACGTGACTCAGAGCAATGGATGCACCACCGCTTGCTTCCAGCGGAGCTAAGGGAAAAAGTTAGACGCTATGAAAAATGTAAATGGTTTAACACACGTGGAGTAGATGAAGAGAGCTTGGTTCAGAAACTTCCCAAAGATCTGAGGAGAGACATCAAACGATACCTTTGTTTGAATTTGGTTAGAAGGGTTCCTCTGTTTGCCAACATGGATGAGCGGTTGCTGGATGCGATATGCGAGCGACTGAAGCCATGTCTGCATACAAAGGGGACGTGCATAATAAGGGAAGGGGATCCGGTGAATGAGATGTTGTTCATTGTACGTGGCCAACTTGAGAGCGTGACGACGGACGGCGGAAGAAGTGGATTCTTCAACAGAGGTTTTCTGAAAGAAGGTGACTTCTGTGGAGAAGAGCTGTTAACATGGGCACTGGACCCAAAATCATCGTCGAATTTACCGTCATCTACAAGGACTGTGAAGGCCATGGATGAAATGGAGGCATTCGCTCTGGAGGCAGAGGAGCTCAAGTTTGTTGCTTCCCAGTTCAGGCGCCTTCACAGCAGGCAGGTTCAGCACACCTTCCGTTTCTACTCCCAGCAGTGGCGGACTTGGGCTGCCATCTTCATCCAGGCTGCCTGGAGGCGCCACCAGAGGAGGAAAATTGCATCCATGCACCACATAAACAAGCTTGATGATGATGACGATGATGATCAATCCCATCATGATGATGATGACGACGACGATGATGATACAAAGGCCTTGATTCCATCTTCTTCCTTTTCATCTTCTACTGCTAATACTACTACTACTACTGCTGCTGCTGCTGCTACTTCTACTATGCTTATTGGGTTAGATTCGGCTATGTATGCTTCCCGGTTTGCAACTAATTTGCGTGGGCAGAGGCCCCGTTCTTCCAGTTCGGAAGGCATCGGCCTTCCCCCCCAAAAGCCTCGAGAACCCGACTTCAGCCATCTTGATGATGATGATGACCCACGCTAA 2169 0.4569 MRKLRFNLKGLGPLPPTGGSGGIRRNDNASKSFGVGMRRGSNGLRVLGRSLKSGVTWASVFPEDLKVSERKIFDPQDKTLLQWNKFFQVLCIISVSFDPLFFYLPYFNHKSFCLAIDSSLASYAVTLRTIFDAIYILRISFQFRTAFIAPSSRVFGRGELVIDPAEIAKRYLQRYFIVDFLSVLPLPQIVVWRYLHDPARTKVLATKTQLLNIVILQYFPRFLRFLPLASEISKTAGVFSENTLVGAAYYLTWYMLGSHITGSVWYLLAVERNDTCWRNACMEEERCFTHFLYCGGSNKRATGYEEWRKISPKILKDKCSADDDDAPFDYGIFNQAITSNIVASINFFPKLCYCLWWGVQNISTLGQGLQASTYNFLQSMSVRLEEMRIRRRDSEQWMHHRLLPAELREKVRRYEKCKWFNTRGVDEESLVQKLPKDLRRDIKRYLCLNLVRRVPLFANMDERLLDAICERLKPCLHTKGTCIIREGDPVNEMLFIVRGQLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKAMDEMEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHQRRKIASMHHINKLDDDDDDDQSHHDDDDDDDDDTKALIPSSSFSSSTANTTTTTAAAAATSTMLIGLDSAMYASRFATNLRGQRPRSSSSEGIGLPPQKPREPDFSHLDDDDDPR* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1771 722 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
Amo04g1771 722 MobiDBLite consensus disorder prediction 644 658 - -
Amo04g1771 722 CDD CAP_ED 456 587 IPR000595 -
Amo04g1771 722 Gene3D Helix hairpin bin 379 447 - -
Amo04g1771 722 MobiDBLite consensus disorder prediction 685 722 - -
Amo04g1771 722 MobiDBLite consensus disorder prediction 626 641 - -
Amo04g1771 722 MobiDBLite consensus disorder prediction 9 31 - -
Amo04g1771 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 374 - -
Amo04g1771 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 376 715 - -
Amo04g1771 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 25 374 - -
Amo04g1771 722 Pfam Ion transport protein 83 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo04g1771 722 Gene3D Jelly Rolls 454 574 IPR014710 -
Amo04g1771 722 ProSiteProfiles cAMP/cGMP binding motif profile. 456 553 IPR000595 -
Amo04g1771 722 SUPERFAMILY Voltage-gated potassium channels 75 369 - -
Amo04g1771 722 SUPERFAMILY cAMP-binding domain-like 386 576 IPR018490 -
Amo04g1771 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 376 715 - -
Amo04g1771 722 SMART cnmp_10 456 587 IPR000595 -
Amo04g1771 722 MobiDBLite consensus disorder prediction 687 701 - -
Amo04g1771 722 MobiDBLite consensus disorder prediction 619 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1771 Amo-Chr4 82875022 82877788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1771 6 712 Ion Channels AT1G15990 60.434 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1771 K05391 - gmx:100810453 968.378