Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1767 ATGAAGACCCGTTCATCCAAATGGGTTATTTGCGTCTTGGTCACTCTCTTCTGCTTCCTCGCGTGCTTCAAAATCGAAGCCAAAGCCATCGACCCTTACAAGGTTCTTGGGGTTGATAAGAATGCAAGTCAGAGGGAAATTCAGAAGGCTTTCCACAAGCTCTCTCTTCAGTATCACCCTGACAAGAACAAGGCCAAGGGTGCACAAGAGAAGTTTGCTCAGATTAACAACGCGTATGAGATTTTATCTGATGAGGAGAAAAGGAAGAATTATGACATGTATGGTGATGAGAAAGGACATCCCGGATTTGAAGCTGGCCAAGCTGGAGGTCAGGGTGGATATTCTTATTTCACGGGTGGTGGACCGGGACAAAGCCAGTTCAACTTCAGACCAGGGGACTGGCAGGGTATGGGTGGGCAAGGAGGAGGATCGAAGTCATTCTCCTTTTCCTTTGGTGGGCCTGGTGGTGGTGGGTCCGGTGGATCTGGCGGATCTTTTGGATTCGATTTGAATGATATTTTTGGTAGTTTTTTTGGCCGTGGCGGAGGAGGAGGTGGTGGGAGTCAGTTTGGGGGTTTTGGCAGCGGTTCAACTGGTTCTCATTTTGGAGGTTTTGGTAGTTCAACTGGTTCTCAATCTGCGTCCAAGAAATCCTCTAAAAGCTTTAAAGCCATAAATTCACGAGTATATGAGAAAGAAATATTTGATCAGGGGATGACGTGGATTTTGTTAGCTTATACACCATCATTGAAGGGGATCCAGCACTTCGAATCTGTCTCTGAGGAGACTTCCAGTTCATTGCAAGGGGCATTGAAGGTTGGAAGTATTAATTGTGAAAAGGAAATATCATTCTGTAAGGAGATTGGTGTGAATCTGCGCAAAGCTCCACGGCTTTTTGTTTATTCTTACAAGGAGAATGAAAAGGGTTCTCTGGTTGAGTATACTGGTGACTTGTCTGTTAAGGATTTGAAGGCTTTTTGTCAAGAACACTTGCCTAGGTTTTCCAAACGGACTGACGTGAAATCTCTTGATCAATTAAGCACTACTGGAAAGTTGCCTAGGGTGATGCTTCTCTCAACCAAAAAAGACACTCCTGTAATCTGGCGTGTGCTTAGTGGCTTGTATCACAAGCGCTTGGCATTCAATGATGCACAGGTTCAAGATGTTTCTGATCCAAGAGTGAAAAAGTTAGGAGTTGATGGACTTCCAGCTATTGTGGGTTGGCTACCTAATGGAGAGAAGCGCATTTTGAAATCAGGGATTTCTGTAAAAGATTTGAAATCTGCAGTTCTTGATCTTAGTAGCCTACTTGATAGTTTTGAAAAATTATGTAAAAAGGAAGCATCTGGGCATGCTACGAAGACACAAACTGATTCTGAAGAGGGACACATACAGTTGCTTTCTAAGTCTAACTTTGAGGAGCTATGTGGTGATAAAGCTCCGGTATGCATCATTGGTGCCTTCAGGTCTTCTAAAGCCAGAGGAAAGCTAGAGTTAATTCTCTCTCAGGTCTCCCAGAAATCACTTTCAAGGCGACCAAATCAAGGAGCAAGCTCTAGGGATTCAATCTCCTATGCGCTCTTAGATGCTGCAAAGCAAGAATCATTTCTAAAAGCATTCAACAAGACAGATTACAAGTCATCAGATAAATTGTTGATCGCCTACAAGCCTAGGAGAGGTAAATACACTGTATTTAAGGGTGATATGACAATGGAGCAGGTTGAGAATTTCATCAGCTCAGTCCTCAGTGGAGATATACCCTTCAGGGAAACACAAAATAAACCTCTACTCAAGTAG 1797 0.4352 MKTRSSKWVICVLVTLFCFLACFKIEAKAIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEEKRKNYDMYGDEKGHPGFEAGQAGGQGGYSYFTGGGPGQSQFNFRPGDWQGMGGQGGGSKSFSFSFGGPGGGGSGGSGGSFGFDLNDIFGSFFGRGGGGGGGSQFGGFGSGSTGSHFGGFGSSTGSQSASKKSSKSFKAINSRVYEKEIFDQGMTWILLAYTPSLKGIQHFESVSEETSSSLQGALKVGSINCEKEISFCKEIGVNLRKAPRLFVYSYKENEKGSLVEYTGDLSVKDLKAFCQEHLPRFSKRTDVKSLDQLSTTGKLPRVMLLSTKKDTPVIWRVLSGLYHKRLAFNDAQVQDVSDPRVKKLGVDGLPAIVGWLPNGEKRILKSGISVKDLKSAVLDLSSLLDSFEKLCKKEASGHATKTQTDSEEGHIQLLSKSNFEELCGDKAPVCIIGAFRSSKARGKLELILSQVSQKSLSRRPNQGASSRDSISYALLDAAKQESFLKAFNKTDYKSSDKLLIAYKPRRGKYTVFKGDMTMEQVENFISSVLSGDIPFRETQNKPLLK* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1767 598 Coils Coil 65 85 - -
Amo04g1767 598 Gene3D Glutaredoxin 463 588 - -
Amo04g1767 598 PRINTS DnaJ domain signature 51 66 IPR001623 -
Amo04g1767 598 PRINTS DnaJ domain signature 33 51 IPR001623 -
Amo04g1767 598 PRINTS DnaJ domain signature 87 106 IPR001623 -
Amo04g1767 598 PRINTS DnaJ domain signature 67 87 IPR001623 -
Amo04g1767 598 CDD DnaJ 31 84 IPR001623 -
Amo04g1767 598 Pfam DnaJ domain 31 92 IPR001623 -
Amo04g1767 598 SMART dnaj_3 30 87 IPR001623 -
Amo04g1767 598 Gene3D Glutaredoxin 208 330 - -
Amo04g1767 598 SUPERFAMILY Thioredoxin-like 224 332 IPR036249 -
Amo04g1767 598 SUPERFAMILY Chaperone J-domain 19 98 IPR036869 -
Amo04g1767 598 ProSitePatterns Nt-dnaJ domain signature. 72 91 IPR018253 -
Amo04g1767 598 ProSiteProfiles dnaJ domain profile. 31 95 IPR001623 -
Amo04g1767 598 PANTHER DNAJ PROTEIN ERDJ3A 11 597 - -
Amo04g1767 598 Gene3D DnaJ domain 23 106 IPR036869 -
Amo04g1767 598 PANTHER DNAJ PROTEIN ERDJ3A 11 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1767 Amo-Chr4 82722537 82726702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1767 33 94 C2H2 Transcription Factor Family AT1G74250 42.647 3.20e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1767 - - adu:107484989 989.949