LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo04g1762	ATGGTGGATGGAAGTAAGTATTATATAACAGAGCTGATCTTGGCGTGGCTGTCGACCAACATAGGAGGTTCTGCAGTTAGCGGCAGTTCCGGCTGGAATCGGGCGACGGCAGTGACAACCTGGAACTTGAAGATGAGGAAACTAAGATTTAATCTGAAGGGACTGGGGCCGCTTCCTCCGACTGGTGGGAGTGGCGGAATAAGGAGAAACGACAATGCATCAAAATCTTTTAGGGTAGGAATGAGAAGGGGGTCGAATGGGCTAAGAGTACTTGGGAGATCCCTGAAAAGTGGAGTGACGTGGGCATCAGTGTTCCCAGAAGATCTTAAAGTGTCTGAGAGAAAAATATTTGACCCTCAAGACAAGACCCTTCTGCAGTGGAATAAATTCTTTCAAGTTTTGTGTATCATATCTGTATCTTTTGATCCCCTTTTCTTTTATCTCCCATATTTCAATCACAAATCATTCTGTCTTGCCATAGACAGCAGCCTGGCAAGCTATGCAGTTACACTCAGAACAATCTTCGATGCTATCTACATCCTTCGCATAAGTTTCCAGTTTCGCACTGCTTTCATTGCGCCTTCTTCTCGTGTCTTTGGACGAGGTGAACTCGTCATAGATCCTGCAGAGATTGCTAAGAGATATTTGCAACGTTACTTCATTGTTGACTTCCTCTCTGTGTTGCCTTTGCCACAGATTGTCGTGTGGAGATATCTTCATGATCCAGCGCGCACAAAGGTATTAGCCACAAAAACGCAACTGTTGAACATTGTCATCCTCCAATATTTTCCAAGATTTCTACGCTTTCTACCTTTGGCCTCAGAGATTAGCAAGACAGCAGGTGTTTTTTCGGAGAATACTTTGGTCGGCGCCGCATATTACTTGACCTGGTACATGCTTGGTAGCCACATAACTGGGTCTGTATGGTACTTATTAGCTGTAGAACGTAATGACACGTGCTGGAGGAATGCTTGCATGGAGGAAGAGCGATGTTTCACGCATTTCTTGTACTGTGGGGGTTCAAATAAGCGTGCTACTGGCTATGAAGAATGGAGAAAGATTAGCCCAAAGATTCTTAAGGATAAGTGTTCCGCTGATGATGACGACGCCCCATTTGACTATGGAATTTTCAATCAAGCCATAACATCTAATATTGTTGCATCAATCAATTTCTTTCCTAAACTATGTTACTGTTTATGGTGGGGTGTCCAAAACATAAGCACACTTGGTCAAGGGCTTCAAGCTAGCACCTACGTCGGAGAAATTCTTTTTTGCATTTTATTAGCTGTTTTGGGGCTTGTCCTTTTTGCTGTTTTGATTGGAAAGATGCAGAACTTTCTTCAATCGATGTCTGTCCGTCTAGAGGAAATGAGGATCAGAAGACGTGACTCAGAGCAATGGATGCACCACCGCTTGCTTCCAGCGGAGCTAAGGGAAAAAGTTAGACGCTATGAAAAATGTAAATGGTTTAACACACGTGGAGTAGATGAAGAGAGCTTGGTTCAGAAACTTCCCAAAGATCTGAGGAGAGACATCAAACGATACCTTTGTTTGAATTTGGTTAGAAGGGTTCCTCTGTTTGCCAACATGGATGAGCGGTTGCTGGATGCGATATGCGAGCGACTGAAGCCATGTCTGCATACAAAGGGGACRTGCATAATAAGGGAAGGGGATCCGGTGAATGAGATGTTGTTCATTGTACGTGGCCAACTTGAGAGCGTGACGACGGACGGCGGAAGAAGTGGATTCTTCAACAGAGGTTTTCTGAAAGAAGGTGACTTCTGTGGAGAAGAGCTGTTAACATGGGCACTGGACCCAAAATCATCGTCGAATTTACCGTCATCTACAAGGACTGTGAAGGCCATGGATGAAATGGAGGCATTCGCTCTGGAGGCAGAGGAGCTCAAGTTTGTTGCTTCCCAGTTCAGGCGCCTTCACAGCAGGCAGGTTCAGCACACCTTCCGTTTCTACTCCCAGCAGTGGCGGACTTGGGCTGCCATCTTCATCCAGGCTGCCTGGAGGCGCCACCAGAGGAGGAAAATTGCATCCATGCACCACATCAACAAGCTTGATGATGATGACGATGATGATCAATCCCATCATGATGATGATGACGACGACGATGATGATACAAAGGCCTTGATTCCATCTTCTTCCTTTTCATCTTCTACTGCTAATACTACTACTGCTGCTGCTGCTGCTGCTACTTCTACTATGCTTATTGGGTTAGATTCGGCTATGTATGCTTCCCGGTTTGCAACTAATTTGCGTGGGCAGAGGCCCCGTTCTTCCAGTTCGGAAGGCATCGGCCTTCCCCCCCAAAAGCCTCGAGAACCCGACTTCAGCCATCTTGATGATGATGATGACCAACGCTAA	2376	0.4583	MVDGSKYYITELILAWLSTNIGGSAVSGSSGWNRATAVTTWNLKMRKLRFNLKGLGPLPPTGGSGGIRRNDNASKSFRVGMRRGSNGLRVLGRSLKSGVTWASVFPEDLKVSERKIFDPQDKTLLQWNKFFQVLCIISVSFDPLFFYLPYFNHKSFCLAIDSSLASYAVTLRTIFDAIYILRISFQFRTAFIAPSSRVFGRGELVIDPAEIAKRYLQRYFIVDFLSVLPLPQIVVWRYLHDPARTKVLATKTQLLNIVILQYFPRFLRFLPLASEISKTAGVFSENTLVGAAYYLTWYMLGSHITGSVWYLLAVERNDTCWRNACMEEERCFTHFLYCGGSNKRATGYEEWRKISPKILKDKCSADDDDAPFDYGIFNQAITSNIVASINFFPKLCYCLWWGVQNISTLGQGLQASTYVGEILFCILLAVLGLVLFAVLIGKMQNFLQSMSVRLEEMRIRRRDSEQWMHHRLLPAELREKVRRYEKCKWFNTRGVDEESLVQKLPKDLRRDIKRYLCLNLVRRVPLFANMDERLLDAICERLKPCLHTKGTCIIREGDPVNEMLFIVRGQLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKAMDEMEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHQRRKIASMHHINKLDDDDDDDQSHHDDDDDDDDDTKALIPSSSFSSSTANTTTAAAAAATSTMLIGLDSAMYASRFATNLRGQRPRSSSSEGIGLPPQKPREPDFSHLDDDDDQR*	792

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo04g1762	791	MobiDBLite	consensus disorder prediction	754	791	-	-
	Amo04g1762	791	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	69	784	-	-
	Amo04g1762	791	MobiDBLite	consensus disorder prediction	689	726	-	-
	Amo04g1762	791	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED	69	784	-	-
	Amo04g1762	791	SUPERFAMILY	Voltage-gated potassium channels	119	448	-	-
	Amo04g1762	791	MobiDBLite	consensus disorder prediction	756	770	-	-
	Amo04g1762	791	SMART	cnmp_10	526	657	IPR000595	-
	Amo04g1762	791	SUPERFAMILY	cAMP-binding domain-like	456	646	IPR018490	-
	Amo04g1762	791	Pfam	Cyclic nucleotide-binding domain	549	636	IPR000595	-
	Amo04g1762	791	CDD	CAP_ED	526	657	IPR000595	-
	Amo04g1762	791	Gene3D	Helix hairpin bin	449	517	-	-
	Amo04g1762	791	Gene3D	Jelly Rolls	524	644	IPR014710	-
	Amo04g1762	791	Pfam	Ion transport protein	127	453	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Amo04g1762	791	ProSiteProfiles	cAMP/cGMP binding motif profile.	526	623	IPR000595	-
	Amo04g1762	791	Gene3D	-	129	448	-	-
	Amo04g1762	791	MobiDBLite	consensus disorder prediction	696	711	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo04g1762	Amo-Chr4	82588077	82591814	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo04g1762	50	781	Ion Channels	AT1G15990	62.822	0.0	926

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo04g1762	K05391		-	gmx:100810453	1015.37