Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1749 ATGTGTATTGTTATTTGGATCTGCTATCTGAAGGATTTCGTCGGAGATATCAATCCAACCAAGCTTGCCTGGTCTTTGGTTGTGGGGGTTGCTCGATTGTATGAGTTTCCAAGTCAGTGGAACAAGAATGAGGTGTTTAGCTTGGAGTTGGTTTTACAAGATGAGAAGGGTGATAGAATTCATGCAACCGTTTGTAAGCCTGGGTTGGAGTTGTTCAAAAATAGGATAAAGGAGCATTGTGTTTATAGTATGCAAAATTTTATTGTCAAGCTTAACAATGGAAAGGTTAGGACAACTCCTCACAAGTACAAGCTTAACTTTTATACAAAGACTGTGGTGGCAGCCCTACCTATTGAGACTTTTGCTTTTAACCCATTCAAATTCCGTCCGTTTCATGAACTTGATGAAAATGGTCCAACCGACGGAAATTTATTATTTGATTACATAGGAGAGGTTGTTGGAAAGGAGGAGGTCAGAGGGCTGATTACGCGCACTGGTGATGAAACGAAGCTTATTACACTTCAGTTGGAAGATCTAGAAAAGCACAAAATTAAATGTACACTGTTTGGGGAATTGGTCGATCAAGTTCTTCCACATCTCGAGCGAGATGATGGGGAGCCTTTCATAATGGTGGTTCAGCTCTTTAAGTCCAACATATACTTGAATTCTGTCAATATTCAAAGTACCTACTATGTGTCCACATGTTACTTCAATCCAAACATTCCTGAGGTTATTGACTTCAAGAAAAGTCAGCTGGAAGCTCAACCTCAATACTCAGTTAGAGATGAGATCAGTGCCGGCATTGTACCAGTGCGCACTATAGAAGAGGTTCTTAATATCACTGAGGAAACGTCATGTTGGATTGTTGGGACCATTGTTTCTCTAGAAACATGTCCTAAGAAGGTTGTGCAAAGCAAAGATAGGTATTGGTGTGATAATTGTAGGCGTGTAGGCTTCAAGGTTATGCTAAGGTATAGGCTCCAACTAATTGTGACTGATGGAAGTGGTTGTCTGAACCTCATTGTGTGGAACAAAGAAGCAGAGCAAATGATAGGAAAGGCTGCTGAGAAAGTTAAGGAATTATCTAAATGCGATAAAGGAGATTCATACCCTAAATACCTAGAGAATATGATTGACAAAAGGTTCTTATTCAAGCTTAACATCACATACAAGAATATCAATTCCGTGGAAGGGGTGTACAGCGTCACAAAACTTTCGGATGACGAGTCCCTCATGTCCAGTTATGGTGTGCCCAATTCTTCTTCTGATGCTTCTTGTTTGCAGATGCTACCTAATATCCCTATAGCCGAAACAGACGAAGATAGCAATGGACATGCTGCAGTTTCCCTGTCTAAGAGCAACTGTGATAGCTCCTGTCAAACTCCAGCCAAGAGAACCTCTTCTGATGCAGTTGATGACTCCCCAGCAACAGCAGCCCTATCTCCAGATGTTCAGGCATCCGCTAACAAAACATTTAAGAGGAATTCTGGTAATGTTGTCCCAGATTTTATGAATTACAAATTATTAGATATCAAGTTTATTCTCAACTACTTTATCTTATTTATTATCCCATTCGCCACAAAACTCTTTCTCCTTATCACACATTCACATTATTTTTTCAATCCTCCATTGAAAAGTATACTAATTAAACCATTGTAA 1659 0.3972 MCIVIWICYLKDFVGDINPTKLAWSLVVGVARLYEFPSQWNKNEVFSLELVLQDEKGDRIHATVCKPGLELFKNRIKEHCVYSMQNFIVKLNNGKVRTTPHKYKLNFYTKTVVAALPIETFAFNPFKFRPFHELDENGPTDGNLLFDYIGEVVGKEEVRGLITRTGDETKLITLQLEDLEKHKIKCTLFGELVDQVLPHLERDDGEPFIMVVQLFKSNIYLNSVNIQSTYYVSTCYFNPNIPEVIDFKKSQLEAQPQYSVRDEISAGIVPVRTIEEVLNITEETSCWIVGTIVSLETCPKKVVQSKDRYWCDNCRRVGFKVMLRYRLQLIVTDGSGCLNLIVWNKEAEQMIGKAAEKVKELSKCDKGDSYPKYLENMIDKRFLFKLNITYKNINSVEGVYSVTKLSDDESLMSSYGVPNSSSDASCLQMLPNIPIAETDEDSNGHAAVSLSKSNCDSSCQTPAKRTSSDAVDDSPATAALSPDVQASANKTFKRNSGNVVPDFMNYKLLDIKFILNYFILFIIPFATKLFLLITHSHYFFNPPLKSILIKPL* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1749 552 Gene3D - 13 115 IPR012340 -
Amo04g1749 552 PANTHER REPLICATION FACTOR A 1, RFA1 33 471 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo04g1749 552 SUPERFAMILY Nucleic acid-binding proteins 14 116 IPR012340 -
Amo04g1749 552 CDD RPA1_DBD_C 288 394 IPR013955 -
Amo04g1749 552 Gene3D - 122 258 IPR012340 -
Amo04g1749 552 PANTHER BNAC07G49340D PROTEIN 33 471 - -
Amo04g1749 552 SUPERFAMILY Nucleic acid-binding proteins 126 250 IPR012340 -
Amo04g1749 552 CDD RPA1_DBD_A_like 25 113 - -
Amo04g1749 552 Pfam Domain of unknown function DUF223 49 115 IPR003871 -
Amo04g1749 552 Pfam Replication factor-A C terminal domain 296 394 IPR013955 -
Amo04g1749 552 Gene3D - 262 413 IPR012340 -
Amo04g1749 552 SUPERFAMILY Nucleic acid-binding proteins 270 405 IPR012340 -
Amo04g1749 552 CDD RPA1_DBD_B_like 147 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1749 Amo-Chr4 82177419 82182549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1749 17 395 Core DNA Replication Machinery Family AT5G08020 24.882 1.76e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1749 - - adu:107463979 944.88