Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1727 ATGGGTTTGTCTGCAGAATCACAGTTTCATGTTTTGGCTGTTGATGATAGTCTCATTGACAGAATGTTGATTGAAAGACTTCTCAAAACTTCATCATTTCATGTTACTGCAGTGGACTCAGGAAGTAAGGCTTTAAAATTTCTTGGATTGGTTGAAGAAGAGCAGAGAAATGAAGAGCCTTCCTTTGTTGCTCAAAAAACTCATAATCAGGATGTAGATGTGAACCTGATCATAACAGATTATTGTATGCCAGAAATGACAGGCTATGATCTTCTTAGAAAGATCAAGGAATCAAAATCTCTTAAAGATATACCAGTTGTGATTATGTCCTCAGAGAATGTTCCATCAAGGATCAATAGAAAGTGTCCAAAATGTTCACCGGTTCCCTCCCCACACTTAAGATCAAGCATCGTCCTCGATGCTAAACTGGAGGATCAGTGGAAGGGACAACGATAG 456 0.3882 MGLSAESQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSGSKALKFLGLVEEEQRNEEPSFVAQKTHNQDVDVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRKCPKCSPVPSPHLRSSIVLDAKLEDQWKGQR* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1727 151 ProSiteProfiles Response regulatory domain profile. 10 143 IPR001789 GO:0000160
Amo04g1727 151 Pfam Response regulator receiver domain 11 116 IPR001789 GO:0000160
Amo04g1727 151 SMART REC_2 9 137 IPR001789 GO:0000160
Amo04g1727 151 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 2 120 - -
Amo04g1727 151 SUPERFAMILY CheY-like 8 115 IPR011006 -
Amo04g1727 151 Gene3D - 4 125 - -
Amo04g1727 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 120 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1727 Amo-Chr4 81523421 81525787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1727 1 120 Response Regulator Gene Family AT3G57040 68.333 5.16e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo04g1727 Response_reg 4.6e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1727 K14492 - gmx:100818762 205.682