Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1706 ATGGGTTATTCTGAAACCAATCAGCATGACGAAGAAGCATCCAAGATTCCAGCGTTGCCAACTGATGCACCTAATGATGCAGATGATGTGAAATTGAGGTCTAGGGACCAAAGAGAGGCTCTCCTGGGTGAGCCAAAGTGTATCATATGTGGCCGTTATGGTGAGTATATCTGTGATGAAACTGACGATGATGTTTGCAGTTTGGAATGCAAACAATTACTACTAGGCAGAATCGCCAAATCCTTGCCTCCTGTTGGAGGAGTTCTTCAGCCGCCTAAAAAACTACCTGCAGCTGACGAGTGCTTTTATGTTAGAGAGAATGATTGTGAATCAGGAACTTTATCTTTAGCTAGAGATCAGGTTGAATTGCTTAGAAAGAAGCTTGAAATTCATGTGAAGGGTGATGTAGTGGCGCCGGTTTTGTCATTTGCTTCATGCAGTCTCCCTGACAAGCTCCTCCACAATGTAGAAGCAGCGGGGTATGAAATGCCTACCCCTGTTCAGATGCAAGCAATCCCTGCCGCTTTGACGGGAAATAGCACGCTTGTTCTGGCTGAAACAGGATCTGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGATGTGCAAGTCATCGCCTTGTATTTACTTCAGATAAGAAGCCTTTAGCGATGGTGTTAACACCTACTAGAGAGCTTTCTATACAGGTTGAAGAGCATGCAAAGTTGCTCGGAAAGGGGTTACCATTTAAAACTGCCCTTGTGGTTGGTGGCGAGGCCATGGCTAGACAACTCTATCGCTTTCAGCAAGGAGTTGAACTGATTGTGGGAACACCAGGAAGGCTTGTCGATCTTTTAACAAAGCATGAGATCGACTTAGATAACGTGATGACTTTAGTTTTGGATGAAGTTGATTGCATGCTTCAAAGGGGTTTCAGAGATCAGGTCATACAGATATACAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTCATGATTTAGAGAAGATGGCAAACTCTCTTGCGAATGGTGTGTCGGTTATCTCTGTTGGGAAGGTGAATAGCCCAAATAAGGCTGTGAAGCAGGTCGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGACATATTACTGAGTAGGCAACATTTTAAGCCACCGGCTGTAGTGTATGTGGACTCCCGACTTGGAGCAGATCTTCTGGCAAATGCAATAAAAGTTGCCACAGGAATTTCAGCTAATTCAATTCATGGAGAGAAGTCCATGAAGGAAAGGAGAGATATAATGCAGTCACTTTTGGTTGGTGAGGTTCCGGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGAGTTGACCTATTGGGTGTGAGGCAGGTAATTGTGTTTGACATGCCAAATTCTATTAAGGAGTACATACATCAGATTGGAAGGGCATCTAGGATGGGAGGGGAAGGTGAAGCCATAGTTTTTGTGAATGAGGAGAGCAAGAATGTCTTTCCAGATTTAGTTGATGTATTAAAATCTGGTGGAGCAGCTGTTCCCCGGGAGCTTGCCAATTCACGGTATACCACTGGATTTTTTCCTGGTGGCAAGGGTTCAAAAAAGCGAAAGCATAGATAA 1620 0.442 MGYSETNQHDEEASKIPALPTDAPNDADDVKLRSRDQREALLGEPKCIICGRYGEYICDETDDDVCSLECKQLLLGRIAKSLPPVGGVLQPPKKLPAADECFYVRENDCESGTLSLARDQVELLRKKLEIHVKGDVVAPVLSFASCSLPDKLLHNVEAAGYEMPTPVQMQAIPAALTGNSTLVLAETGSGKSASFLIPIISRCASHRLVFTSDKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGEAMARQLYRFQQGVELIVGTPGRLVDLLTKHEIDLDNVMTLVLDEVDCMLQRGFRDQVIQIYRALSQPQVLMYSATMSHDLEKMANSLANGVSVISVGKVNSPNKAVKQVAIWVESKQKKQKLFDILLSRQHFKPPAVVYVDSRLGADLLANAIKVATGISANSIHGEKSMKERRDIMQSLLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYIHQIGRASRMGGEGEAIVFVNEESKNVFPDLVDVLKSGGAAVPRELANSRYTTGFFPGGKGSKKRKHR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1706 539 CDD SF2_C_DEAD 359 491 - -
Amo04g1706 539 SMART ultradead3 160 362 IPR014001 -
Amo04g1706 539 Gene3D - 349 523 IPR027417 -
Amo04g1706 539 Gene3D - 109 348 IPR027417 -
Amo04g1706 539 SMART helicmild6 400 482 IPR001650 -
Amo04g1706 539 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 347 IPR014001 -
Amo04g1706 539 Pfam Helicase conserved C-terminal domain 373 482 IPR001650 -
Amo04g1706 539 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Amo04g1706 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 495 IPR027417 -
Amo04g1706 539 Gene3D - 26 82 - -
Amo04g1706 539 Pfam HIT zinc finger 45 71 IPR007529 -
Amo04g1706 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 348 IPR027417 -
Amo04g1706 539 Pfam DEAD/DEAH box helicase 165 335 IPR011545 GO:0003676|GO:0005524
Amo04g1706 539 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 521 IPR001650 -
Amo04g1706 539 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 522 - -
Amo04g1706 539 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 27 522 - -
Amo04g1706 539 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1706 Amo-Chr4 80925848 80929419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1706 135 519 Eukaryotic Initiation Factors Gene Family AT3G19760 29.487 5.97e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1706 K19466 - gmx:100781473 812.372