Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1684 ATGGAAATGTCTTCGAGCCCTCGCACCGTTGAAGAGATCTTCAAGGACTACAGCGCTCGTAGAACCGCTGTTGTTCGTGCACTCACTCAAGATGTTGATGAATTTTACGGCCTCTGTGATCCAGACAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAATCATGGGAAGTAACTCTGCCAGCAGAGGAGGTTCCACCAGAGCTTCCTGAGCCAGCGCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTTTGGTTGCGGTTCACAGTGACTCGTGGCTGCTTTCTGTGGCCTTCTATCTTGGAGCTCGTCTTAACCGCAATGAGAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTTTTTGAGGTTGTGACTGACAGAAAACCAAGCAAGGACAAGCCCACTGTGGATAGTGGGAGCAAATCTCGGGGAAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGATGAGGGTTACGAAGAGGATGAAGATGAGCACAGCGAAACCCTCTGTGGTAGCTGTGGTGGAAATTACAACGCAGATGAATTCTGGATTGGCTGTGATATTTGTGAGAGATGGTTCCATGGGAAATGTGTGAAGATTACCCCGGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCAACATGAGGCGGGGCAGGCCCTAG 720 0.4833 MEMSSSPRTVEEIFKDYSARRTAVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPSKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCNMRRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1684 239 MobiDBLite consensus disorder prediction 148 165 - -
Amo04g1684 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Amo04g1684 239 SMART PHD_3 185 233 IPR001965 -
Amo04g1684 239 MobiDBLite consensus disorder prediction 134 176 - -
Amo04g1684 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Amo04g1684 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Amo04g1684 239 CDD PHD_AL_plant 185 235 IPR044104 -
Amo04g1684 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Amo04g1684 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Amo04g1684 239 Pfam PHD-finger 186 233 IPR019787 -
Amo04g1684 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Amo04g1684 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1684 Amo-Chr4 80169270 80173785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1684 4 238 Alfin-like Transcription Factor Family AT5G05610 77.119 3.68e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Amo04g1684 Alfin 6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1684 - - gmx:100793126 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2749 14 117945490 117949932 Amo04g1684 04 80169270 80173785 hybridization
Amo04g1684 04 80169270 80173785 Amo12g2289 12 103300493 103304659 PCT
Amo04g1684 04 80169270 80173785 Amo02g2526 02 79072756 79076949 PCT
Amo12g2289 12 103300493 103304659 Amo04g1684 04 80169270 80173785 PCT
Amo02g2526 02 79072756 79076949 Amo04g1684 04 80169270 80173785 PCT