Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1683 ATGATGTCTGCAAATATTTTGAGTGATCCTCAGAAGCGTGCAGTTTATGATCAGTATGGTGAGGAGGGGCTGAAGGGGCAGGTACCACCACCAGGTGGTGGCAGTGACAGCAGTTCTGCGAATTTCCAGTTCAATCCCAGAAGTGCAGATGATATATTTTCGGAGTTCTTTGGTTTCTCCAGTTCATTTGGTGGAATGGGGGACATGGGTGGTCGTGCTGGCGCATCTAGCTTTTCCAGGGGCGGCATGTTTGGTGATGATATCTTTTCTCAGTTTAGGAGTGGAGCTGGAGAGGGCTCTGCCCATATGCCAAGGAAAAGTGCACCAATAGAGATAATATTGCAATGTAGCTTGGAGGATTTGTATAAAGGGACATCGAAAAAGATGAAGATTTCGAGGGATGTTATTGATGCCAATGGAAAGCCCACCAAAGTAGAGGAAATCCTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGCGAAGGGAAATGAGCAAAGAGGACATATCCCCGCAGACCTTGTGTTCATCATCGACGAGAAGCCGCATAGTGTCTTCAAGAGGGATGGCAATGATCTTGTTTTCACCCAGAAGGTATCCCTTGTAGAAGCTCTAACAGGTTACACGGTGCAGCTGACAACCCTTGARGGCCGAAACCTTACCATCCCCGTTAATTCAATCATTAGTCCGTCTTACGAAGAAGTCYTTAAAGGAGAGGGCATGCCAATTCCTAAAGAACCCTCCAAGAAAGGTAACTTGCGAATCAAGTTCAACATCAAGTTCCCGTCCAGGCTTACATCCGAGCAGAAAAACGGCATTAAGCGATTATTGACATCATATTCGTCTACATGA 870 0.454 MMSANILSDPQKRAVYDQYGEEGLKGQVPPPGGGSDSSSANFQFNPRSADDIFSEFFGFSSSFGGMGDMGGRAGASSFSRGGMFGDDIFSQFRSGAGEGSAHMPRKSAPIEIILQCSLEDLYKGTSKKMKISRDVIDANGKPTKVEEILTIEIKPGWKKGTKITFPAKGNEQRGHIPADLVFIIDEKPHSVFKRDGNDLVFTQKVSLVEALTGYTVQLTTLEGRNLTIPVNSIISPSYEEVXKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKNGIKRLLTSYSST* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1683 289 SUPERFAMILY HSP40/DnaJ peptide-binding domain 191 277 IPR008971 GO:0006457|GO:0051082
Amo04g1683 289 CDD DnaJ_C 108 271 - -
Amo04g1683 289 Gene3D DnaJ domain 2 71 IPR036869 -
Amo04g1683 289 SUPERFAMILY Chaperone J-domain 5 67 IPR036869 -
Amo04g1683 289 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 5 285 - -
Amo04g1683 289 Gene3D - 189 269 - -
Amo04g1683 289 Pfam DnaJ C terminal domain 110 268 IPR002939 -
Amo04g1683 289 MobiDBLite consensus disorder prediction 1 44 - -
Amo04g1683 289 Gene3D - 109 187 - -
Amo04g1683 289 SUPERFAMILY HSP40/DnaJ peptide-binding domain 110 189 IPR008971 GO:0006457|GO:0051082
Amo04g1683 289 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 5 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1683 Amo-Chr4 80155298 80158704 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1683 K09510 - nnu:104602593 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2748 14 117864781 117868430 Amo04g1683 04 80155298 80158704 hybridization
Amo04g1683 04 80155298 80158704 Amo12g2285 12 103278590 103282497 PCT
Amo04g1683 04 80155298 80158704 Amo02g2525 02 79067364 79071151 PCT
Amo12g2285 12 103278590 103282497 Amo04g1683 04 80155298 80158704 PCT
Amo02g2525 02 79067364 79071151 Amo04g1683 04 80155298 80158704 PCT