Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1681 ATGGCCGAACTTCATTCCACTTCAAATTCAACTCTAACTCCTCCTCCGTCTACTTCCGCGGGTAACAATGAATCTTCTGGAGCTTCACCGTCGACTTCCCGAGGCCGTCGCAACGATCAGAACGCCGCTGACCGATCTCAGGCTCGATTCCGGTCGCCTGAAATTGAACCGATCGTTGGCCATGCTGGCAGAGTCATTGGCTGGGGAATCGGGGACGAGTCGTCGTCTGTTAGGGAAGATGCATGGTCATGCTTTGCTGTTGTATTCACGTTTTGGTTTTTCGTGTCAGTGACTATAATACTTGGGGTTTATGGGTCCATGAATCTCTTGCTTGGTCCAGAAACATCGATTGTGTTCCAACCTAGCCCTCTGTTCGTGCAATATCTCAGGGTAGAAAACTTAGAAGAAAAGCCAGGTCCTGTCGTGTATGGTACTTACCAATATCCAGATCTTGATGAATGGATTTATTATCTGAATACTGGTTCAGAAGTGAATATTTCATATCACTTGAGCCCTGTGAGCTCCTCCGTTCTCCTTATAATTGCAGATGGGGCTGAAAGCCTCGCTCAGTGGATTGAATACCCTACATACCGTAATTCAACTCTCTCATGGAACATGATCCATGGTATGACAAAGGAGCTGGTGGAACTAAACCTCACAGTTAGGGCCTACTTGCACAATACAAAGAATGCTTACTACAAATATGCCTTGGCAAGTAGAAGTTCGTGCAGTTTGAGCATTTTCTTTCCACAAGGAAACGCAGCTATCTTGACTACTCCTGGTCCACAAAAGAATGCATCAGATGATGAATGGTACGTCAAAGTGACCTATGGACCTAGATGGATCACATATATTGTAGGCATAGGTGGATTGACTTTGCTTATGTTTTGGGCATTCAACCTCTTGAACAATCTCCAGTTTGCCCGTGAAGAAAGAGCAGGAGTTATAAACAATGGGACGGCACCTGATAGAGGCCCTTTGCGCTCTCGAAAAGATGATGACCTTTCCAGCTGGGGTTCATCATATGATTCACTGTCACAAGATGACGAAGATCTTGACTCTCAGGCCGGAGGTTCCGCGGAGGGGAAGTCTCTAGGTGATGGAGAAATTAGTAACAATACTCGGCGTCTCTGTGCCATTTGCTTTGATGCTCCGAGGGATTGTTTCTTTCTTCCTTGTGGGCACTCTGCAGCTTGTTTTGAATGTGGAACTAGGATCGCCGAGGCTGCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAAGTGAGAAAGATTTTTACTGTTTGA 1290 0.4605 MAELHSTSNSTLTPPPSTSAGNNESSGASPSTSRGRRNDQNAADRSQARFRSPEIEPIVGHAGRVIGWGIGDESSSVREDAWSCFAVVFTFWFFVSVTIILGVYGSMNLLLGPETSIVFQPSPLFVQYLRVENLEEKPGPVVYGTYQYPDLDEWIYYLNTGSEVNISYHLSPVSSSVLLIIADGAESLAQWIEYPTYRNSTLSWNMIHGMTKELVELNLTVRAYLHNTKNAYYKYALASRSSCSLSIFFPQGNAAILTTPGPQKNASDDEWYVKVTYGPRWITYIVGIGGLTLLMFWAFNLLNNLQFAREERAGVINNGTAPDRGPLRSRKDDDLSSWGSSYDSLSQDDEDLDSQAGGSAEGKSLGDGEISNNTRRLCAICFDAPRDCFFLPCGHSAACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1681 429 SMART ring_2 378 416 IPR001841 -
Amo04g1681 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 429 IPR013083 -
Amo04g1681 429 ProSiteProfiles Zinc finger RING-type profile. 378 417 IPR001841 -
Amo04g1681 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 2 429 - -
Amo04g1681 429 Pfam Domain of unknown function (DUF4792) 152 188 IPR032008 -
Amo04g1681 429 MobiDBLite consensus disorder prediction 1 37 - -
Amo04g1681 429 PANTHER OS05G0521000 PROTEIN 2 429 IPR044586 GO:0004842
Amo04g1681 429 MobiDBLite consensus disorder prediction 318 367 - -
Amo04g1681 429 Pfam Domain of unknown function (DUF4793) 212 297 IPR032010 -
Amo04g1681 429 SUPERFAMILY RING/U-box 377 423 - -
Amo04g1681 429 Pfam Zinc finger, C3HC4 type (RING finger) 375 423 - -
Amo04g1681 429 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1681 Amo-Chr4 80060871 80066011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1681 351 426 C3H Transcription Factor Family AT3G06140 27.632 4.27e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1681 - - ahf:112743648 786.563