Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1673 ATGGCGTCTCACCAACAAGAGCCATGGCTTCTAGAGAATGGAAATGTGAAGGTGTTGACTAAGGAAATGCGGCACGGCCATGGCCGGAGCCGTACTGCCCACAACATGTCGTCCTCTTCTCTTAGGAAGAAATCCGACCGGACCCTGGTGTCGAAGGTTCGGTGCGGATTGCTAAGGAATTTGTTGGTTAACATCCAAGAAGTTATTCTGGGGACAAAGTTGTCCATCTTGTTCCCAGCAATTCCCATTGCCATCATTGCCCAATGCTATGGCCTTGGAAGACCATGGATTTTCGCATTGAGCTTACTTGGGCTTACACCGCTTGCTGAACGTGTCAGCTTCCTCACAGAACAAGTTGCAATTTACACTGGTCCTACAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATATTACTGAGCTGGTCATAGCAATATTTGCACTGAGTAGTAACAAAGTTGATTTGGTGAAGTATTCTCTACTGGGTTCTATCCTCTCAAACCTTCTGCTGGTTCTTGGAACCTCTCTCTTGTGTGGTGGCATTGCAAACCTTGCAAAGGAACAAAAATATGACAGAAGACAAGCAGATGTGAACTCTCTAATGCTTCTGCTGGCATTGTTGTGCCACTTGCTTCCAATGCTGTTCAGATACGGCGGTGGTGGCTCGGACGACGCTCTCGCGGCCGCGGACTCATCGCTGTACTTGTCGAGGGCCGCCAGCATTACCATGTTGGTTGCATATTTTGCTTACCTTATCTTTCAGCTGTGGACACACAGGACATTGTTTGAAGCTGAAGATGAGGATGGAGATGGTGAGAATGGTTCAGATGATGAAGAAGCTGTGATTGGAGTGTGGAGTGGTGTTGCATGGCTGGCTGGGATGACTGTCTTCATTGCCTTGTTATCTGAATATGTGGTGGACACAATTGAGGAAGCATCAGAGTCATGGGGTCTTTCTGTAAGCTTTCTCAGCATAATTTTGCTACCAATTGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGATATCACGTTGGGTGTTGCATTAGGTTCTGCCACGCAAATTGGCATGTTTGCGGTTCCTCTATGTGTGCTGGTTGCTTGGATAATGGGTGTTAAAATGGATCTAAACTTCAATCTCCTAGAAACCGGTTCTCTTGCTTTGGCAATAATAGCCACATCCTTTACTTTACAGGATGGTACATCTCACTACATGAAAGGGCTTATTCTTCTTTTGTGCTACGTTGTCATTGGTGCTTGCTTCTTTGTACAAAGAACACCCTTAAACCAAGTGAATGTTAACATCACATTCAAGTCAGCAAGTGATGCAGTTTTAAATGCTTAA 1368 0.4539 MASHQQEPWLLENGNVKVLTKEMRHGHGRSRTAHNMSSSSLRKKSDRTLVSKVRCGLLRNLLVNIQEVILGTKLSILFPAIPIAIIAQCYGLGRPWIFALSLLGLTPLAERVSFLTEQVAIYTGPTVGGLLNATCGNITELVIAIFALSSNKVDLVKYSLLGSILSNLLLVLGTSLLCGGIANLAKEQKYDRRQADVNSLMLLLALLCHLLPMLFRYGGGGSDDALAAADSSLYLSRAASITMLVAYFAYLIFQLWTHRTLFEAEDEDGDGENGSDDEEAVIGVWSGVAWLAGMTVFIALLSEYVVDTIEEASESWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIGMFAVPLCVLVAWIMGVKMDLNFNLLETGSLALAIIATSFTLQDGTSHYMKGLILLLCYVVIGACFFVQRTPLNQVNVNITFKSASDAVLNA* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1673 455 Gene3D - 125 284 IPR044880 -
Amo04g1673 455 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 1 443 IPR004713 GO:0006812|GO:0008324|GO:0016021
Amo04g1673 455 TIGRFAM caca2: calcium/proton exchanger 60 430 - -
Amo04g1673 455 MobiDBLite consensus disorder prediction 24 43 - -
Amo04g1673 455 Pfam Sodium/calcium exchanger protein 288 425 IPR004837 GO:0016021|GO:0055085
Amo04g1673 455 Pfam Sodium/calcium exchanger protein 96 256 IPR004837 GO:0016021|GO:0055085
Amo04g1673 455 TIGRFAM cax: calcium/proton exchanger 79 430 IPR004798 GO:0006816|GO:0015369
Amo04g1673 455 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1673 Amo-Chr4 79815258 79820405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1673 1 439 Antiporters AT2G38170 66.441 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1673 K07300 - gmx:100779440 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2732 14 116476493 116481647 Amo04g1673 04 79815258 79820405 hybridization
Amo04g1673 04 79815258 79820405 Amo12g2273 12 102996763 103002319 PCT
Amo12g2273 12 102996763 103002319 Amo04g1673 04 79815258 79820405 PCT