Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1639 ATGCTAGTCTTTTACTTTTTAATTCCTAGTTTGACATTGTTGAAGAGAAGGTGCAGAGAACTCAGCATCAATCGCTGGCCTCATAGGAAAATCAAAAGCTTGCATTTACTCTTACAAAATCTTATACTTATAATTATTGGGCTGATCAATGATTGA 156 0.3397 MLVFYFLIPSLTLLKRRCRELSINRWPHRKIKSLHLLLQNLILIIIGLIND* 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1639 51 ProSiteProfiles RWP-RK domain profile. 1 51 IPR003035 -
Amo04g1639 51 Pfam RWP-RK domain 10 34 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1639 Amo-Chr4 78177522 78177677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1639 10 41 AtRKD Transcription Factor Family AT5G53040 68.750 4.65e-10 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo04g1639 RWP-RK 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1639 - - aip:110264064 57.7658