Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1519 ATGGGTGGAGTTGCTTGGACTGAAGAAGAGGATCACTTGCTTAAGAAATGCATACAACAATATGGTGAAGGCAAATGGCATAGGGTTCCTCTATTGGCTGGTCTAAACAGGTGCCGAAAGAGCTGCAGACTAAGGTGGCTGAACTACCTTCGTCCTAACATAAAAAGAGGAAATTTTGCAGAGGAAGAAGTGGAGATGATTGTTAAACTCCACAAATTATTGGGAAATAGAGGCGGAACCAAAGGGGACCAGCAGGCTGCATGGTTCCCCACAAGGTGGTCACTGATTGCAGGAAGGCTGCCGGGAAGGACTGCCAACGATGTGAAGAACTATTGGAATTGTCATCTGAGCAAGAAACTGAATGCAATGGAAGGCGAAGASAGATCACAAGCGACYAAAAATGTTGAAGTGATWAGGCCACAGGCTAGAAACATTGGCACTTCAAGCTCCATGAAGCGAAGAAGGGGAATTCAGGGCGAGTCATCATCSCCGATCGAGAGCGATTTACTTGCTCAACAAGAAATCAGTGGCATGTCGTCCACAATGTCGTTTGATGCCGACGGACAAAGCCATCATAACATGCTAGAATCGCAGCTAGAAAACAACATATACTCATGCTTGGAGCAKCAGGACATTGTTGGTGAGTTGCCTATGGATTTCCGWTTCGAAGGAGGAGTYGAAGAGATCATCAACGCCGGCGAAGGGAGCAGCGGCCAGTGGGATTGGGATGACTTGCTGTTAGACATGGATCTATATAAAGATTTTGCGACTAATTAG 777 0.4607 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRGGTKGDQQAAWFPTRWSLIAGRLPGRTANDVKNYWNCHLSKKLNAMEGEXRSQATKNVEVIRPQARNIGTSSSMKRRRGIQGESSSPIESDLLAQQEISGMSSTMSFDADGQSHHNMLESQLENNIYSCLEXQDIVGELPMDFRFEGGVEEIINAGEGSSGQWDWDDLLLDMDLYKDFATN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1519 258 MobiDBLite consensus disorder prediction 143 163 - -
Amo04g1519 258 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Amo04g1519 258 Pfam Myb-like DNA-binding domain 56 113 IPR001005 -
Amo04g1519 258 SUPERFAMILY Homeodomain-like 5 112 IPR009057 -
Amo04g1519 258 ProSiteProfiles Myb-like domain profile. 51 116 IPR001005 -
Amo04g1519 258 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 77 - -
Amo04g1519 258 Gene3D - 58 143 - -
Amo04g1519 258 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Amo04g1519 258 PANTHER MYB TRANSCRIPTION FACTOR 5 77 - -
Amo04g1519 258 PANTHER MYB TRANSCRIPTION FACTOR 91 254 - -
Amo04g1519 258 Gene3D - 4 55 - -
Amo04g1519 258 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 91 254 - -
Amo04g1519 258 CDD SANT 58 116 IPR001005 -
Amo04g1519 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Amo04g1519 258 SMART sant 2 52 IPR001005 -
Amo04g1519 258 SMART sant 55 118 IPR001005 -
Amo04g1519 258 CDD SANT 5 50 IPR001005 -
Amo04g1519 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 120 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1519 Amo-Chr4 72898400 72903212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1519 5 150 MYB Transcription Factor Family AT1G66370 53.205 3.64e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo04g1519 Myb_DNA-binding 5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1519 K09422 - gmx:100798101 321.242