Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1516 ATGGTTAACTGGCCTCTGCTTTCTCTGTCATGCTTGATTAAGTTCATGAAGGGTAAGGAAGGTAAAGCCGTGGTAGTGGGAATTATAACCGATGATATCAGAATGTATGAAGTTCTTGCATTGAAAGTTACTGCACCCAGGTTTATAGAGACTGCACATGCTAGAATAGAGATGGCTGGTGATGAATGCTTGACATTTGATCAGCTTGCACTTAGGGCACCTCTCGGACAGAACACGGTTCTTTTTAGAGGCCCAAAGAACTCCAGGAAAGCTGTAAAATACTTTGGTCCTGCTTTTGGTGTTCCTCACAGCCATACCAAGCCTTATGTACGATCTAAGAAAAGGATGTTTGAGAGGGCTAGAGGAAGGAAGAAC 375 0.4347 MVNWPLLSLSCLIKFMKGKEGKAVVVGIITDDIRMYEVLALKVTAPRFIETAHARIEMAGDECLTFDQLALRAPLGQNTVLFRGPKNSRKAVKYFGPAFGVPHSHTKPYVRSKKRMFERARGRKN 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1516 125 Pfam Ribosomal protein 60S L18 and 50S L18e 3 124 IPR021131 -
Amo04g1516 125 PANTHER 60S RIBOSOMAL PROTEIN L18 2 125 IPR000039 GO:0003735|GO:0005840|GO:0006412
Amo04g1516 125 Gene3D - 1 125 - -
Amo04g1516 125 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 2 125 - -
Amo04g1516 125 SUPERFAMILY Ribosomal proteins L15p and L18e 3 83 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1516 Amo-Chr4 72771829 72772533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1516 2 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 72.581 1.73e-60 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1516 K02883 - jre:108987469 193.741