Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1505 ATGTTGAATCGTCGTGGTGGTGAAGAAGATGAGTTATATGAACAACTATGGGAAGCATGTGCAGGACCCCATGTGGATGTTCCTCGTTCTGGTCAAAGAGTGTTCTATTTTCCACAGGGACATATGGAGCAATTAGAAGAATCAACAAATCAGGAACTAAATCAGAGGATTCCAGTGTTCAAACTTCCCACTAAGATCCTTTGTCGTGTCGTCAACGTCCATTTGCTGGCTGAACAAGAAACGGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCGACGAGCCCTGATTTGTGCCCCGCCGAGCTTCCAAGGCCACAAAATCACTCCTTTTGCAAGGTCTTAACTGCCTCCGATACCAGCACTCATGGCGGTTTCTCGGTTCTCAGAAAGCATGCCACCGAATGCCTTCCAGCTTTGGACATGTCTCAGCCAACCCCAACTCAGGAACTGGTCGCCAAGGATCTTCATGGTTACGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGGCACTTGATCACAACTGGATGGAGTACTTTTGTAGCTTCGAAGAGATTAGTCGCCGGAGACACCTTTGTGTTTCTGAGAGGACACAACGGAGAGTTACGTGTTGGACTGAGGCGTAATACTCCTCAGCCGAGCAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCATCTTGGAGTACTCGCAACTGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTTGTATATTACAAGCCAAGGAGGTGCCAGTTCATTGTTGGCTTGAACAAGTATTTAGAGGCTATGAACCACAAGTTTGCTGTTGCTATGAGATTCAAGATGAGGTTCGAGGGTGAAGATACCCCTGAAAATGAGAGAAGATTTTCTGGGACAATAGTTGGAGTAGAGGATATTTCTCCTTATTGGGTAAATTCGAATTGGAGATCGCTTAAGGTTCTATGGGATGAACCTGCATCTGTTCCAAGACCTGATAGGGTCTCACCTTGGGAAATAGAGCCCCTTATGGCTTCTGTTGTTACTTCTTCACTTCAATCTCCTGTTTTAAAGAATAAAAGGCCTCGGCTACCTGGTGAAGTTCATGAACTTGACACAAGATCGGCTGCTTCGACTTTCTGGGATGCTGCGTTGGCACATTCAGATGTAACGCAACTTAGCGTTATTGCTGAAAGCAATATGAGTGATGGTACCCATGTGTGGAATCACAAGCTGATTGACAACAGTAAAGGAAGCTACAATGCTATGTTGAGGATTCAGACCGAAGCAATTCGGGTTTCTTCTCCCCATTCAAGTGGCCCATCTCAATTATTTCAGGACACAACATTTGATGATGGCAAGAGGTTAAACAACAATGATCATTTGCTTGATCAAGTAGACAAGGAGCACAAAATGGAGACGGCTACGAGCTGTCGATTGTTTGGAATCGAGCTTATTGATCATGCCAAGAACTCTCCTGCTGTAGAGAAGGCATCATCCATAGCGAATGCATCCGGAGTTACCAATGAGGGCTCTGTTAATACCATGTCCCGAACTGATGCAGACCAAAACTCTGATATAGTTAAGACTTCGAACAAAGAGCGAAAGCACGAAGAGCCGCAACAAGTATCCAAAAGAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCTGTGGGGCGCGCCATAGACTTGACCATGTTGGAAGGGTATGATCAACTTGTTGAAGAACTGGAGAAGTTGTTTGATATAAAGGGAGAGCTCCAACACAGAAATACGTGGCAAATTGTCTTCACTGATGACGAAGGTGATATGATGCTTGTTGGCGATGATCCATGGCCTGAATTCTGCAATATGGTGAGAAGAATCTTCATCTGTTCCAGCCAGGACGTGAAGAAAATGAGCTCTGTGAGGACCAAACTACCCCTCTCTTTAACAGAAGAGGAAACTGTAATAAGCTCAGACACAGCTGGGACCTGA 2019 0.4517 MLNRRGGEEDELYEQLWEACAGPHVDVPRSGQRVFYFPQGHMEQLEESTNQELNQRIPVFKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQAEPTSPDLCPAELPRPQNHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFLRGHNGELRVGLRRNTPQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRRCQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPENERRFSGTIVGVEDISPYWVNSNWRSLKVLWDEPASVPRPDRVSPWEIEPLMASVVTSSLQSPVLKNKRPRLPGEVHELDTRSAASTFWDAALAHSDVTQLSVIAESNMSDGTHVWNHKLIDNSKGSYNAMLRIQTEAIRVSSPHSSGPSQLFQDTTFDDGKRLNNNDHLLDQVDKEHKMETATSCRLFGIELIDHAKNSPAVEKASSIANASGVTNEGSVNTMSRTDADQNSDIVKTSNKERKHEEPQQVSKRETQSKQICSRSCTKVQMQGVAVGRAIDLTMLEGYDQLVEELEKLFDIKGELQHRNTWQIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSVRTKLPLSLTEEETVISSDTAGT* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1505 672 Pfam AUX/IAA family 537 644 IPR033389 -
Amo04g1505 672 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 656 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo04g1505 672 Gene3D - 114 219 IPR015300 -
Amo04g1505 672 Gene3D - 556 648 - -
Amo04g1505 672 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Amo04g1505 672 CDD B3_DNA 115 217 IPR003340 GO:0003677
Amo04g1505 672 MobiDBLite consensus disorder prediction 510 554 - -
Amo04g1505 672 Gene3D - 278 352 - -
Amo04g1505 672 PANTHER AUXIN RESPONSE FACTOR 6 656 - -
Amo04g1505 672 MobiDBLite consensus disorder prediction 531 549 - -
Amo04g1505 672 Pfam Auxin response factor 243 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo04g1505 672 SUPERFAMILY CAD & PB1 domains 563 636 - -
Amo04g1505 672 ProSiteProfiles PB1 domain profile. 560 641 IPR000270 GO:0005515
Amo04g1505 672 MobiDBLite consensus disorder prediction 510 530 - -
Amo04g1505 672 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Amo04g1505 672 SMART B3_2 117 219 IPR003340 GO:0003677
Amo04g1505 672 SUPERFAMILY DNA-binding pseudobarrel domain 109 246 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1505 Amo-Chr4 71011309 71016108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1505 2 648 B3 DNA Binding Superfamily AT4G23980 57.798 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo04g1505 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1505 K14486 - gmx:100779003 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2582 14 109433416 109438131 Amo04g1505 04 71011309 71016108 hybridization
Amo04g1505 04 71011309 71016108 Amo02g2203 02 72475435 72480362 PCT
Amo02g2203 02 72475435 72480362 Amo04g1505 04 71011309 71016108 PCT