Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1501 ATGGAGGACGCGGAATCGAAAGAGAGGATTGAGGAAACGGTGCGGACGATTCTAGAAGGATCCAACATGGATGAGATGACAGAGTCGAAGATTCGGAAGCAGGCTTCCACCCATCTCGGCCTCGACCTCTCCCAGCCGCCCCTCAAAGCCTTCGTCAAGCAGGTCGTTCAAGCATTCCTCGACGAGAAGCAGCGCCAACCTGAACCTGAAGCAGATCACAACAAGCCGGAGTACGATGACGACGGCGATCTCATCATCTGCAAGCTCTCTGAGAGGAGAAGGGTCACCGTTCAGGACTTCCGAGGCAAAACTTTGGTCTCCATTCGCGAGTATTATCGAAAGGACGGCAAGGAACTCCCTACCTCTAAAGGAATAAGTTTGACAGAGGAGCAATGGTCAGCCTTCAAGAAAAATGTGCCTGCTATAGAAAAGGCCATTAAGAAAATGCAGTCCGGCAACATATAA 465 0.5097 MEDAESKERIEETVRTILEGSNMDEMTESKIRKQASTHLGLDLSQPPLKAFVKQVVQAFLDEKQRQPEPEADHNKPEYDDDGDLIICKLSERRRVTVQDFRGKTLVSIREYYRKDGKELPTSKGISLTEEQWSAFKKNVPAIEKAIKKMQSGNI* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1501 154 Gene3D - 1 62 - -
Amo04g1501 154 MobiDBLite consensus disorder prediction 63 81 - -
Amo04g1501 154 Pfam Transcriptional Coactivator p15 (PC4) 87 138 IPR003173 GO:0003677|GO:0006355
Amo04g1501 154 MobiDBLite consensus disorder prediction 61 81 - -
Amo04g1501 154 Pfam DEK C terminal domain 5 60 IPR014876 -
Amo04g1501 154 Gene3D Transcriptional Coactivator Pc4; Chain A 76 152 IPR009044 GO:0003677|GO:0006355
Amo04g1501 154 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP 4 151 - -
Amo04g1501 154 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 151 IPR045125 GO:0003713|GO:0060261
Amo04g1501 154 SUPERFAMILY DEK C-terminal domain 4 61 - -
Amo04g1501 154 SUPERFAMILY ssDNA-binding transcriptional regulator domain 86 149 IPR009044 GO:0003677|GO:0006355
Amo04g1501 154 PIRSF RNA_polymII_KELP 1 153 IPR017415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1501 Amo-Chr4 70665325 70667203 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Amo04g1501 DEK_C 9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1501 K25815 - gmx:100499671 231.106