Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1463 ATGCTTCCTTTTGGGGGCAGATTCTACGGGTTCGAGAGCTGGCTAGACCATCCTCACCAACACCACTCATCACCCTCTGATGGGTTTTTTGTTCCCGAAGCACCTTTCAAGGCAACGGATCTATTATTCGACGGAGCAGGCAGATCATCCAAACTGGATAATAATAGGAAATCAACGGAAGCCTGCAAGAGCCACAGGGAAGCCGAGAGGAGGCGCAGGCAGCGAATCAACGCTCATCTTTCCACCCTTCGCTCCCTCCTCCCAAACACCGCGAAGGCAGATAAGGCGTCGTTGCTGGCGGAAGTGGTAAAGCACGTGAAGCGGCTAAAGAAAGAGGCCGATGACGTGGCACGAGACCCGTCCAAACCCGACGCCGAAGCAGAACCGTGGCCGTTTCCGGGSGAAMCCGACGAGGCAACACTCAGCTACTGCGACGGAGAACCGAACCTGGTGAAGGCGACGCTGTGCTGCGAGGACCGMCCCGGTCTGAACCGGGACCTGACGCATGCGATTCGGTCAGTTCGAGCGAAAGCGGTTCGGGCCGAGATGATGACGGTTGGGGGCCGGACCAAGAGTGTGGTGGTAATTCAATGGCCAGCAGCGTCTGGTGGTGGTGATTCGAAAGAAGGGGTGGAGGTTGGAGCTCTGGAACGGGCGTTGAAGGCGGTTATTGAGAATCGGGCTTTAGTGGGCTCTGGAATGGGCCGCTTCGTGTTGGGTCAGAAGCGGGCTTGGAATAGTTATGATTCCCCTGATGAGTTTTTGCTAACCAGAGATGCTAGCAAGTAA 789 0.5602 MLPFGGRFYGFESWLDHPHQHHSSPSDGFFVPEAPFKATDLLFDGAGRSSKLDNNRKSTEACKSHREAERRRRQRINAHLSTLRSLLPNTAKADKASLLAEVVKHVKRLKKEADDVARDPSKPDAEAEPWPFPGEXDEATLSYCDGEPNLVKATLCCEDRPGLNRDLTHAIRSVRAKAVRAEMMTVGGRTKSVVVIQWPAASGGGDSKEGVEVGALERALKAVIENRALVGSGMGRFVLGQKRAWNSYDSPDEFLLTRDASK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1463 262 Coils Coil 258 262 - -
Amo04g1463 262 MobiDBLite consensus disorder prediction 113 133 - -
Amo04g1463 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 119 IPR036638 GO:0046983
Amo04g1463 262 Gene3D - 54 117 IPR036638 GO:0046983
Amo04g1463 262 PANTHER TRANSCRIPTION FACTOR BHLH30 52 245 IPR045847 GO:0003700|GO:0006355
Amo04g1463 262 PANTHER OS09G0463900 PROTEIN 52 245 - -
Amo04g1463 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Amo04g1463 262 Coils Coil 99 119 - -
Amo04g1463 262 Pfam Helix-loop-helix DNA-binding domain 62 109 IPR011598 GO:0046983
Amo04g1463 262 SMART finulus 66 115 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1463 Amo-Chr4 69300634 69302033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1463 57 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 45.402 6.07e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo04g1463 HLH 9.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1463 - - aip:107608273 493.041