Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1462 ATGGATCATCAGGGTCAGTGTTTGATGATGTGGACTAAGAGGAAGTACTCTAATAATCTTGTTACTACTATGCCAACAACAAACAACACTCTTGATATTGTAGAATCATGGGAAGAACAAGCTTTTGCAAAAGATGCAGCTGGTTACATATGGCCACCAAGATCATATTCTTGCAGCTTCTGTAGAAGAGAGTTCAGATCGGCTCAAGCTCTTGGTGGACACATGAATGTTCATAGAAGAGATAGGGCAAGGTTAAAGCAGCAGCAGCAACCATCAAGCCCCATTAATAATGATCAAGAAATTGATGATTATTATGATTTCGAAGTTGAAGCTCATCATCATCATCCAGGTCAAAATAATAATCATCCTTTCACCTCTAATTTGGATTATCCTTATAACAGTAACCCTAGTAGTTATTATTATGATCCTGCTACTAATTGTTCATCATCATCAGTTAGTAAGTTCTTCAAAGAGGGACAAACCGTGATTCCGCTTCTTAATTCTTCTATTTTCCGTGGGTGCCTTAAGAGGAATAGTAGTAAGAGTATTATTGTTTCTCCTCCTCATCATCATAGTTTGCCTCAAGATTTCAGATTTTTGGAAACTGTATGTGGTGGTGAAGAGAAAAGTGATGATGATATGGGTGTGAGATTAAGCTTGTTTGTTCATAGGGCTAAAGAGGAAGATATAAGTTCTTTCAAGAAGAGGAAAACAGATGATTCAACGATTCCGAAATCACGTTCAGTAGTTGATGTTAATCATCATCATGTTGAATCACGCAACAAGTTTCAATTTAGCCCTAACTTCATTGAAGAGCTGGATCTGGAGCTGAGACTTGGTTATAGCAGCTCCCAGGTATATAGTAGCAAATAA 873 0.3757 MDHQGQCLMMWTKRKYSNNLVTTMPTTNNTLDIVESWEEQAFAKDAAGYIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQQQPSSPINNDQEIDDYYDFEVEAHHHHPGQNNNHPFTSNLDYPYNSNPSSYYYDPATNCSSSSVSKFFKEGQTVIPLLNSSIFRGCLKRNSSKSIIVSPPHHHSLPQDFRFLETVCGGEEKSDDDMGVRLSLFVHRAKEEDISSFKKRKTDDSTIPKSRSVVDVNHHHVESRNKFQFSPNFIEELDLELRLGYSSSQVYSSK* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1462 290 PANTHER OS07G0101800 PROTEIN 10 282 - -
Amo04g1462 290 Gene3D Classic Zinc Finger 53 115 - -
Amo04g1462 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Amo04g1462 290 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Amo04g1462 290 SMART c2h2final6 56 78 IPR013087 -
Amo04g1462 290 Pfam C2H2-type zinc finger 56 80 - -
Amo04g1462 290 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Amo04g1462 290 PANTHER CHAIN A, NMR STRUCTURE OF THE SINGLE QALGGH ZINC FINGER DOMAIN FROM ARABIDOPSIS THALIANA SUPERMAN PROTEIN 10 282 - -
Amo04g1462 290 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1462 Amo-Chr4 69189147 69190689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1462 36 87 C2H2 Transcription Factor Family AT2G37740 86.792 1.00e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1462 - - aip:107637911 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2570 14 108049121 108050639 Amo04g1462 04 69189147 69190689 hybridization