Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1422 ATGAAACAACATAAAATTACTACGCTAATAGCCACAATTGCAGCACTATTGCTATCATGCACTGCCACGCGTCAGTGTGTGAATTGTGGCCCACACCCAGTTCCATATCCGTTAAGCACCGGACCGGACTGCGGTGACCCGAGTTATAAAATCCGAAGCGCGTGTGTATCGACGGACTTGCATTTTGAAGGCATTCGCCTCAATGAAACCCTTCCTTTTGCCGTTGCCACCGGCAACACTATCATTTTGTTGAATTGTACCATCAACGCGCCTCACGCGCCGCCACTCGACTGCTCCGCAAGTAGCCCGTGCCACAGTTACATTAAGGACCATAAAGATGCCTACGCGTGCGGGCGTGTGGCAACTTGTTGTGCCTACAAAACCGGTGGGCCCCACAAGGAGTACGAGGTTCGGGTTCGCGGTAGTGGTGGTTGTGCGGCGTATCAGAGTTTTGTGGACTTTAACGGTGTGTCGGGGACACCAGGGAATGGGTGGCCAGATTTAGGGGTTGCAATTCAGTGGGTGGCACCACAGGAACCGGTTTGCAAGGGGCCAATGGATTGCAATGCATTGTTGAATTCCAAGTGTGGAGTGGGTCCCACAAGTGGTGGGGTGCAAAGGTGCTTGTGCATTGCTGGCTTCAAGTGGGATCCTGCTAATGGGTTATGTCAAGATAAAAAGTGCAAAGGACATGAAAAGGGCACCCGCTGCAAAGCTCGACAGATAAAGAAAATGGCCATGGCTGCTGTGGCTGCTTCCTTAGGTGGAATAATCACCATTGCAGTAGTAATTGGAGCCCTTTTATACAAGAAGCAAATTGAAATGAAGAAAAAAGCAAAGARAACCSTGAACAAAAAGAAGAAAGAAATAMTCACAAGTGCCAAAGCAACTCCATTGTCATCAAGGATCTTCACGGGCAGAGAGATCAGGAAAGCAACCAACAACTTCGCWGAAGAAAACCTCATCGGCTCTGGTGGCTTCGGCGAAGTGTTCAAAGGCACCTTTGATGACGGATCCATAACTGCCATCAAGCGTGCCAAGCTTGGAAGCACAAAAGGCATTGATCAAATCCAAAATGAAGTTAGGGTACTCTGCCAAGTTAACCAYAGAAGCCTAGTGAGACTCCTTGGTTGTTGCTTGGAGCTARAGCACCCTTTACTAATTTATGAGTATGTTTCTAATGGGACACTCTTTGATTACCTCCATCGTCTCCCTTTGGTCGGAGTAGGCGAAAGGCAACCACTTAAATGGCACACAAGACTAAAAATCGCACACCAAACAGCWGAAGGACTTTCATATCTTCACTCTGCWGCCGTGCCCCCAATCTACCACCGAGATGTAAAATCTAGCAATATTCTTCTTGATGACAAGTTTGATGCCAAGGTTTCTGATTTCGGCTTGTCTAGGCTTGTTGAATTAGCTGAAGAAAACAAGAGTCATATCTTTACGAGTGCGCAGGGGACTCTTGGATACCTTGATCCGGAATACTACCGAAACTTTCAACTGACCGATAAGAGTGATGTTTATAGCTTTGGAGTTGTGTTAATGGAGCTACTCACTGCTCAGAGGGCTATTGACTTTAACAGGGAGGAAGAGAATGTGAACTTGGCAATGTATGCTAAGAAGAAAATAGTTGAGGACAGGCTTATGGAGGTTCTTGATCCGTTGCTTAAAGATGGATCTAGCAATGTGGAACTCGAAACTATGAAATCTTTGAGTTATCTTGCAGCTTCATGCTTGGATGATCAGAGGCAAAAAAGGCCTTCTATGAAAGAGGTTTCTGATGAGATTGAATACCTTATTAATGTTGTTAAGGGTCAAGTTTTAATAATGACTCTAGACCTCTAA 1848 0.4578 MKQHKITTLIATIAALLLSCTATRQCVNCGPHPVPYPLSTGPDCGDPSYKIRSACVSTDLHFEGIRLNETLPFAVATGNTIILLNCTINAPHAPPLDCSASSPCHSYIKDHKDAYACGRVATCCAYKTGGPHKEYEVRVRGSGGCAAYQSFVDFNGVSGTPGNGWPDLGVAIQWVAPQEPVCKGPMDCNALLNSKCGVGPTSGGVQRCLCIAGFKWDPANGLCQDKKCKGHEKGTRCKARQIKKMAMAAVAASLGGIITIAVVIGALLYKKQIEMKKKAKXTXNKKKKEIXTSAKATPLSSRIFTGREIRKATNNFAEENLIGSGGFGEVFKGTFDDGSITAIKRAKLGSTKGIDQIQNEVRVLCQVNHRSLVRLLGCCLELXHPLLIYEYVSNGTLFDYLHRLPLVGVGERQPLKWHTRLKIAHQTAEGLSYLHSAAVPPIYHRDVKSSNILLDDKFDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQRAIDFNREEENVNLAMYAKKKIVEDRLMEVLDPLLKDGSSNVELETMKSLSYLAASCLDDQRQKRPSMKEVSDEIEYLINVVKGQVLIMTLDL* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1422 615 ProSiteProfiles Protein kinase domain profile. 316 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1422 615 Gene3D Phosphorylase Kinase; domain 1 273 391 - -
Amo04g1422 615 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Amo04g1422 615 Gene3D Transferase(Phosphotransferase) domain 1 392 608 - -
Amo04g1422 615 CDD STKc_IRAK 322 598 - -
Amo04g1422 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Amo04g1422 615 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 20 54 606 - -
Amo04g1422 615 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 20 15 52 - -
Amo04g1422 615 Pfam Protein kinase domain 317 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1422 615 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 54 606 IPR045274 GO:0007166
Amo04g1422 615 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 52 IPR045274 GO:0007166
Amo04g1422 615 SUPERFAMILY Protein kinase-like (PK-like) 297 595 IPR011009 -
Amo04g1422 615 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Amo04g1422 615 SMART serkin_6 316 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1422 Amo-Chr4 68036523 68042451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1422 25 608 Receptor kinase-like Gene Family AT5G02070 52.941 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo04g1422 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1422 - - ahf:112794981 1150.96