Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1421 ATGACGATCATAGAGCACTTTCTTCTATTCCTCATCACTACAATCCTTATTACACTATGCGTAAATGCTCTAAAAGATTGTGAAGATTGTGGCCACATCAAAGTGCCATACCCACTAAGCACTTCTCCAAATTGTGGGGACCCAAATTACAAGATTAGATGCAATTCCGGCATGCTTTGGTTCGACACAATCAATGGTTCCTCATACATTATCACCTCGATCAATCCCACGTTGCAGCGTCTTGTGATTCAGCCACCGGGTTTGGCCAACAACACGTGCATGTCACGTGATTTCAAGAACGAAGGGATGTGGCTTGACACAAACTCACCCTTCAACATTACTTCAAGTAACACTTTGATCCTCATGAACTGCTCCCTTGAGATCTTGACCATGCTGTTYAACTGTTCCTCGACCAGCATTTGCCATAAGTACATTGAGGAGGGCAATGCGGTAATTTCTAAGAATTGTGGCGTGACGAGCCACGCCTCGAAATTATGTTGTGATGTAAAGACCGGTGGGTCTGCTACTTCACATAGGATTAGGGTTAGGGAAGATCGTTGTGCTGCATATGCTAGCTTTCCCAATTTGGATCCCTCTTTGCCTGTGAGTATGTGGCRGCCGGGGGTGGAGATAGAGTGGCAGCTKCCWGCCGAGCCGTCGTGCAAGGTAGCGGGGRATTGCTTGGATGTGGCAAACTCTCGTTGTTTGCCGGATCCWGTGGCAGGTGGAGAAGGTAAGTGCTTGTGCAATGCTGGCTTTCAATGGGATCCGGTGAATGGAAAATGCCAAGATACCAAGTGTCAGCATGGAAGAGGATGCAAGCTTCGTAAGAAATCCCCCCTTATTGGAGGGTTGATATTGGCTGGGACTATCATGGTAGCAGGAGCTTTGTTCACTGTAATGGGCTATTACTTTCAGAGGAAAAGGATCAAAAGAGAGATCCAAAAAAGAATAACAAGCAAGGCACACTTCGTACTCAACTCAGACAACAATGGTAGATCTGCAAAAGTTTTCACCATAAAGGAAATCACAAAAGCAACCAACAACTTCTCGAAATCCAACCTCCTCGGCGCCGGCGGCTTCGGCGAGGTSTTCAAAGGTGTTCTGAACGACGGAACCGTCACAGCCATCAAGAGAGCAAAGCATGGCAACATAAGAGGCATTGATCAAATCCTCAATGAGGTTAAGATCCTTTGCCAGGTCAACCATAGAAGCTTAGTGAGGCTTTTGGGTTGTTGTGTTGAGCTTCCAAATGAGCCTCTTCTTATATATGAGTATGTCTCCAATGGCACCCTCTTTGACCACCTTCACAACAGGAACTCCAGCAAATGGATCCGTCTTGGGTGGCATTCAAGGCTAAGAATCGCACACCAAACAGCTGAAGGACTTGCGTATCTTCACGATGCAGCCATACCCAAAATCTACCATAGAGATATCAAGTCAAGCAACATTCTCTTGGACGAAAAACTCGACGCAAAGGTCTCAGATTTCGGGCTTTCGAGGTTAGCGGCCAGCGAAGCGACCCACGTGACAACCTGCGCTCAAGGGACACTGGGCTACCTTGACCCAGACTACTACGTGAACTTTCAGCTCACAGAGAAAAGTGATGTGTATAGCTTCGGTGTTGTTCTGTTAGAGCTACTGTGTTCTAAGAAGGCTATTGATTTCAATAGAGAAGAGGGGGATGTGAATTTGGTTGTTATGGTGAAGAAGGCCTTGAAGGAAGGGATGTTAATGGATAAAGTGGTTGATCCAATGCTGAAAATTGGAGCTAGTAAGTTGGAGTTGGAGAGTATGAGGGCTTTTGGGTCTCTTGCTGTTGGGTGCTTGGATGATAGAAGGGACAATAGGCCCTCAATGAAAGATGTTGCTAACGAGATTGAGTGCATTATTGGTATTTTTGCTGATGCTAAGGCTATGGGGTATTAA 1929 0.4593 MTIIEHFLLFLITTILITLCVNALKDCEDCGHIKVPYPLSTSPNCGDPNYKIRCNSGMLWFDTINGSSYIITSINPTLQRLVIQPPGLANNTCMSRDFKNEGMWLDTNSPFNITSSNTLILMNCSLEILTMLFNCSSTSICHKYIEEGNAVISKNCGVTSHASKLCCDVKTGGSATSHRIRVREDRCAAYASFPNLDPSLPVSMWXPGVEIEWQLPAEPSCKVAGXCLDVANSRCLPDPVAGGEGKCLCNAGFQWDPVNGKCQDTKCQHGRGCKLRKKSPLIGGLILAGTIMVAGALFTVMGYYFQRKRIKREIQKRITSKAHFVLNSDNNGRSAKVFTIKEITKATNNFSKSNLLGAGGFGEVFKGVLNDGTVTAIKRAKHGNIRGIDQILNEVKILCQVNHRSLVRLLGCCVELPNEPLLIYEYVSNGTLFDHLHNRNSSKWIRLGWHSRLRIAHQTAEGLAYLHDAAIPKIYHRDIKSSNILLDEKLDAKVSDFGLSRLAASEATHVTTCAQGTLGYLDPDYYVNFQLTEKSDVYSFGVVLLELLCSKKAIDFNREEGDVNLVVMVKKALKEGMLMDKVVDPMLKIGASKLELESMRAFGSLAVGCLDDRRDNRPSMKDVANEIECIIGIFADAKAMGY* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1421 642 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Amo04g1421 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Amo04g1421 642 Pfam Protein kinase domain 351 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1421 642 SMART serkin_6 350 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1421 642 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 633 IPR045274 GO:0007166
Amo04g1421 642 ProSiteProfiles Protein kinase domain profile. 350 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g1421 642 Gene3D Phosphorylase Kinase; domain 1 324 426 - -
Amo04g1421 642 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 27 633 - -
Amo04g1421 642 CDD STKc_IRAK 356 628 - -
Amo04g1421 642 Pfam Wall-associated receptor kinase galacturonan-binding 27 83 IPR025287 GO:0030247
Amo04g1421 642 Gene3D Transferase(Phosphotransferase) domain 1 427 635 - -
Amo04g1421 642 SUPERFAMILY Protein kinase-like (PK-like) 334 630 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1421 Amo-Chr4 68004619 68019795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1421 27 636 Receptor kinase-like Gene Family AT5G02070 53.215 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo04g1421 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1421 - - aip:107636586 1273.46