Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1372 ATGTCTTCTTGTAGCAGAATGGTCCACGAATTGGATGCAGATGATGAAGAGAATTTTAACGTCTCCGAAGATAGCGAGAATTGTGATGCAACAGAGACGCTGGTGGATACAGGGATCGAGGCAGAGATATTAGAGATGGAGTTCGCTAACTCGGATGAGGTGTGTCATTTCTATGAGCAATACAGTCGAGCAAAGGGTTTTGCCATGCGACAAGGGAAGAAAATGAAGAATAGGAAGGGTGAAATTGTTCGCTACACGTACCTGTGCAATAGAGAAGGATTAAGACACAGAAAATGGCTTCAGATGCAAGATCGGAAGAGGGAGCACAAGGTTGTAACCCGCTGCGGGTGTCAGGCTGAGATGAGGATAAAGCGGAAAGCCAATAGCACCAGTTGGTATGTGTGTCATTTTGTGGATGAGCATAACCACGACCTTCTTCCAGCAAAGTTTGTGTCATACCTACCAGCTTACAGGAAAATATCAGATGTTGATGTAGCCCACATCGAAAGTTTGAGGCAAGTTGGGATTTCAATTCCAAAAATTTATGAGTCTATTGCTGCCCAGGCGGGGGGGTTTAACCTAGTTTCATTCACGAAGAGAGATATGTATAATGTGGAGGAGCTTGACTTTAGGTCGTTGTATGGGAGCCCCGTGCTCCAAACTCAGTTTCCAGAGCTAGAGAAGTCTGGTGCATTGAACTACACAAAGGAAATATTTGTGCGTTTTAGAGATGCCCTGAAGAGAAGCGTGCGGATTACTATTGTAGAGTGCAACAAATTGGAAGATCGGACGGTTTATGTGACACAGAAGTATCGTAGGCCACAATTCCGGTGGACTGTTGCCCCCATTTTCGAGAGGATTCCTTTTTGTAGTTGCCTGAGATTTGAGTCGTTCGGACTACCTTGTGTGCACATACTTGCGGTGTTGGTACAGTTGGACATAGGTTGTCTTCCAAAAACCATAGTGTTGAAACGCTGGTCAAAGACTGCAAAAGTTGAGCTGGAGGGGTCTTCCCTCATGAACGAAGAGGGGGATGCGAATGCAGTATACAAGGTGCGAGTGGGTGCTTTCCTGCAGCATTGTAAACGGCTGGCAAGAGTTGCGTGTATGCGAGAGAATGATTTCAAGAGTTCTTTGGAGAAGATAGTTGAAGAGACCGTTTTCTTGGAAATGAAGAATGGTGTTGGGACTGCCGGCAGGTGTAGCGTTGATGGCGCAGAAGAAGGAGTGCGCGATCCCGTTGCGGTTCGGAGTAAGGGAACTGGGCGTGCTCAAGAGCCTTTTGGGTGTCGGGGAAGAAAGCGGCGCAAGTGCAGCACCTGTGGTGTAGTTGGTCATCGCCGAACTCGTTGCCCGAGCGGTCCACCAAGTCAGCCAACATGTAGCCAAGATCCGACAGAAGATATTGTGGCCGGCGATGAAGACCAAAGCCAAAGAGGTAGCAAGACCGTGCGTGTGATTGCAAGCCCGTTGACCGATAACTAA 1485 0.4774 MSSCSRMVHELDADDEENFNVSEDSENCDATETLVDTGIEAEILEMEFANSDEVCHFYEQYSRAKGFAMRQGKKMKNRKGEIVRYTYLCNREGLRHRKWLQMQDRKREHKVVTRCGCQAEMRIKRKANSTSWYVCHFVDEHNHDLLPAKFVSYLPAYRKISDVDVAHIESLRQVGISIPKIYESIAAQAGGFNLVSFTKRDMYNVEELDFRSLYGSPVLQTQFPELEKSGALNYTKEIFVRFRDALKRSVRITIVECNKLEDRTVYVTQKYRRPQFRWTVAPIFERIPFCSCLRFESFGLPCVHILAVLVQLDIGCLPKTIVLKRWSKTAKVELEGSSLMNEEGDANAVYKVRVGAFLQHCKRLARVACMRENDFKSSLEKIVEETVFLEMKNGVGTAGRCSVDGAEEGVRDPVAVRSKGTGRAQEPFGCRGRKRRKCSTCGVVGHRRTRCPSGPPSQPTCSQDPTEDIVAGDEDQSQRGSKTVRVIASPLTDN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1372 494 MobiDBLite consensus disorder prediction 449 494 - -
Amo04g1372 494 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 44 162 - -
Amo04g1372 494 Pfam FAR1 DNA-binding domain 56 147 IPR004330 -
Amo04g1372 494 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 209 333 - -
Amo04g1372 494 SMART 26again6 288 315 IPR006564 GO:0008270
Amo04g1372 494 Pfam SWIM zinc finger 289 309 IPR007527 GO:0008270
Amo04g1372 494 ProSiteProfiles Zinc finger SWIM-type profile. 278 313 IPR007527 GO:0008270
Amo04g1372 494 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 209 333 IPR031052 GO:0006355
Amo04g1372 494 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 162 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1372 Amo-Chr4 65607522 65610339 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g1372 FAR1 2.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1372 - - adu:107466741 547.74