Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1338 ATGTCAACTTTGCAGATGTCCCATGTTATTGATTTAGAGCAAGGAAATCATGAGGATGATGCTGTTGTTGGAGGTGTTGGGAGTGATGATGATGATGGTAGCGTGTATTTATCTGATGCAGAAGAGGGTGGTTCAAGCCACTCTCATTTCTATTCAACACATGGTGATGGTGGCTCAGCATTTGATGATTGCAGCTTCTCATGTGTCTCTGATCTTGAAGCTGCTGCTGTTGTTCATGATTCTGGGAGGGCTTCTTTTGCTTCTGATTTCTCTGTGGAGCTGGGAAATGCAGCTGCGGTTCCTGAAATCAAAGTGCATTTGGATAATAATATTATTAATAATAATCACAAAGTGGAGAGGGATTGTAGAATTTGTCACATGGGTTTGGAGAGTGATAGTTCTGAGTCTGGTGTTCCAATTGAATTGGGTTGTGCTTGTAAAGATGATCTTGCTGCTGCTCACAAAATATGTGCTGAGACATGGTTCAAGATTAAGGGGAATTTGACCTGCGAAATTTGTCATTACGTTGCACGGAATGTTCATGGCACAACTGACCATTCTAGTGACGGGAACAACCCTGCTGCAATAGCTGCACTTTCAACACATGCAACTCCAGCAGAAGCTCGAAGATTTTGGCATGGTCATCGCTTCCTAAACTTTCTTCTTGCTTGTATGGTTTTCGCATTCGTCATATCATGGCTTTTCCATTTCAATGTGCCGTCATCATAG 729 0.4239 MSTLQMSHVIDLEQGNHEDDAVVGGVGSDDDDGSVYLSDAEEGGSSHSHFYSTHGDGGSAFDDCSFSCVSDLEAAAVVHDSGRASFASDFSVELGNAAAVPEIKVHLDNNIINNNHKVERDCRICHMGLESDSSESGVPIELGCACKDDLAAAHKICAETWFKIKGNLTCEICHYVARNVHGTTDHSSDGNNPAAIAALSTHATPAEARRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1338 242 CDD RING_CH-C4HC3_MARCH 122 174 - -
Amo04g1338 242 Pfam RING-variant domain 122 173 IPR011016 GO:0008270
Amo04g1338 242 ProSiteProfiles Zinc finger RING-CH-type profile. 114 180 IPR011016 GO:0008270
Amo04g1338 242 PANTHER OS01G0850200 PROTEIN 5 241 - -
Amo04g1338 242 SUPERFAMILY RING/U-box 118 177 - -
Amo04g1338 242 SMART ringv_2 121 174 IPR011016 GO:0008270
Amo04g1338 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 185 IPR013083 -
Amo04g1338 242 PANTHER ZINC FINGER, RING-CH-TYPE 5 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1338 Amo-Chr4 64262201 64265646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1338 77 242 C3H Transcription Factor Family AT5G05830 55.556 6.91e-59 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1338 - - ahf:112743475 485.723