Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1310 ATGCAGCTCTGTTTTATCGTCACCGGCGCTATCTCTGTTCCACCTGTCATCCCTTCGAAGGATGTGTTTGATGAGGATGAGGAAGATAAATACAAGGAAAGGAATCCAGGAAATAGTTTGAAGAGAAAAGAGAGTGGCAGTGGAGGAAAGTCAACCTTGGAAGAATTTATAAGGGAAGAGGAGAACAAAAAGGAGAAAATCAACAGGAAGGACTATTGGTTGCGTGAGGGAATCATTGTTAAGGCTATAAATCCTCTGGAGCTATCCATGGATGCTCTAAAGGAAATCCATTCACGATTTATGAAGACTTTCCACCACATCCACAGGAACAGATTTATGATCTTGGAGGTGGAATCAACCAAATTCCAGGGGAATGTTAACCCTATTTTACAATATATTTCATTTGCAAATGTGAAGGATGTAGTAACAAAGCTGCAAGAATATGTGGACAACATTAATCTCAACATATATAAGCTAGAAACACGGGGTCTTGTTTCAAAATATGTCTTTCCTGATGATGACTTAAGGGGAAGGTGCACAATGGTAAGTGGTGGTGGCCGTATTAGGCCTCAAAAGGATCCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATTGAGGAGGGCAACCTGGTGTATGGCGACATCAAATACTTGGTCTTGAATGAGGCAGATATAATGTTTGATCGTGGCTTTGGTCCTGATATATGCAAATTTCTGGCCCCATTGAAACATCGTGCATCAAAGTCTGATGGCCTAGGTTTTCTGACCATCTTGGTAACCGCAACAATGACAATGCTAGAAGTTAAGAGGCATTGTACATCTGCGACATTAACATTGCATAAAAGGATTTCTTCTGCTCGTCACAATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTGGAAGCATTACTTCAGTTACTTGTGCCAAGCCGAGCAAAAGGCAACAAGGTGATGGTTTTTTGCAATACTTTGGACTCTAACCGTGCGGTGAATCACTACCTTGTTGAAAATATGATTCATACTATCAACTACCATGGGGAAGTACCAGCAGAGCAAAGGTGA 1086 0.4098 MQLCFIVTGAISVPPVIPSKDVFDEDEEDKYKERNPGNSLKRKESGSGGKSTLEEFIREEENKKEKINRKDYWLREGIIVKAINPLELSMDALKEIHSRFMKTFHHIHRNRFMILEVESTKFQGNVNPILQYISFANVKDVVTKLQEYVDNINLNIYKLETRGLVSKYVFPDDDLRGRCTMVSGGGRIRPQKDPLNNPIDMVVGTPGRILQHIEEGNLVYGDIKYLVLNEADIMFDRGFGPDICKFLAPLKHRASKSDGLGFLTILVTATMTMLEVKRHCTSATLTLHKRISSARHNFIKLSGSENKLEALLQLLVPSRAKGNKVMVFCNTLDSNRAVNHYLVENMIHTINYHGEVPAEQR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1310 361 MobiDBLite consensus disorder prediction 24 40 - -
Amo04g1310 361 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 176 361 - -
Amo04g1310 361 MobiDBLite consensus disorder prediction 24 57 - -
Amo04g1310 361 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 176 361 - -
Amo04g1310 361 Gene3D - 135 289 IPR027417 -
Amo04g1310 361 Coils Coil 50 70 - -
Amo04g1310 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 361 IPR027417 -
Amo04g1310 361 Pfam DEAD/DEAH box helicase 178 277 IPR011545 GO:0003676|GO:0005524
Amo04g1310 361 Gene3D - 293 361 IPR027417 -
Amo04g1310 361 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 102 289 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1310 Amo-Chr4 62374418 62377924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1310 184 361 Eukaryotic Initiation Factors Gene Family AT3G19760 27.604 4.28e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1310 - - ahf:112766979 289.271