Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1278 ATGAACGGGAAAGCCTCAATCTCCAAGGAGCTTAATGCCAAGCATACCAAGATGGATTATTTAACCTTTATTAGTTATTTTTGTTTCTTATATGATGCCACTTGTCACTATTTGCAGATCTTAGAAGGACTTATGAAGCTACAAGAAAATAGGGAATGTGCAGACTGCCGGAACAAGGCACCACGATGGGCGAGTGTGAACCTAGGGATATTTATTTGCATGCAATGTTCCGGGATACACCGAGGTCTTGGAGTGCATATATCCAAGGTGCGATCTACAACCTTGGATACATGGTTGCCCGATCAAGTTTCTTTCATGCAATTTATGGGTAATGAAAAATCAAATAAGGATTGGGAGGCAAAGCTGCCCCCCAATTTCGACAGAGGCACAATGGGAATTGAGAAATTTATTTATTCCAAGTATGTGGAGAAAAAGTGGGCTTCAAAAGAAGGATTAATTAGTGGAGCTACAAATTATTTCCCGAAGAACATTAGTAGGAAACTTTCTTTAGAAGAAAGCATTCTTTCCAAACACGTGGCACAAGTTCTGCCTCCATTGACACGAGCTCATGGTGGG 576 0.4097 MNGKASISKELNAKHTKMDYLTFISYFCFLYDATCHYLQILEGLMKLQENRECADCRNKAPRWASVNLGIFICMQCSGIHRGLGVHISKVRSTTLDTWLPDQVSFMQFMGNEKSNKDWEAKLPPNFDRGTMGIEKFIYSKYVEKKWASKEGLISGATNYFPKNISRKLSLEESILSKHVAQVLPPLTRAHGG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1278 192 Pfam Putative GTPase activating protein for Arf 40 149 IPR001164 GO:0005096
Amo04g1278 192 Gene3D Arf GTPase activating protein 32 152 IPR038508 -
Amo04g1278 192 PRINTS HIV Rev interacting protein signature 90 111 IPR001164 GO:0005096
Amo04g1278 192 PRINTS HIV Rev interacting protein signature 50 69 IPR001164 GO:0005096
Amo04g1278 192 PRINTS HIV Rev interacting protein signature 69 86 IPR001164 GO:0005096
Amo04g1278 192 ProSiteProfiles ARF GTPase-activating proteins domain profile. 38 154 IPR001164 GO:0005096
Amo04g1278 192 SUPERFAMILY ArfGap/RecO-like zinc finger 39 148 IPR037278 -
Amo04g1278 192 SMART arf_gap_3 39 154 IPR001164 GO:0005096
Amo04g1278 192 CDD ArfGap 41 141 - -
Amo04g1278 192 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 190 IPR044520 GO:0005096
Amo04g1278 192 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1278 Amo-Chr4 60328074 60336011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1278 41 169 C2H2 Transcription Factor Family AT4G21160 38.406 3.63e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1278 K12486 - gmx:100803735 263.848