Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1264 ATGCTTGAGTTGAAAACAGAAGCGTGTTGTCTGGAGAATAAGCAATCCACTGCTGCTTCTTGCTCCTCTGTTTCCGAAGGCAGTGGCAGCCCAATTAACAAGTCCACAGAGATGTGTGGCCCTACATCTACATCGCCCTCACACCGGAGGACCACTGGCCCTATAAGGCGTGCAAAGGGAGGTTGGACAGCAGAAGAGGATGAGACATTAAGGAATGCTGTTGCAACTTACAAGGGCAAGAATTGGAAGAAAATAGCTGAGTATTTTCCTGATAGAACAGAAGTTCAATGCCTTCACAGATGGCAAAAAGTTCTCAATCCAGAACTTGTTAAAGGACCTTGGACATTGGAGGAGGATGATAAAATTGTTGAACTGGTCTCAAAATTTGGGCCTACAAAATGGTCTCTTATAGCCAGGTCTTTGCCTGGTCGAATAGGGAAACAGTGCCGAGAGCGATGGCACAATCATCTTAATCCTGACATAAAGAAAGATGCCTGGACTTTGGACGAGGAATTGGCCCTGATAAATGCTCATCATACCCATGGGAACAAATGGGCTGAAATAGCCAAGGTTCTTCCTGGAAGAACTGATAATGCAATAAAGAACCATTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAGACTTCCACCAGTGCCAAAGAACAATGCACAAGTTGCTGTCAAAGATACAATTAGACTTTCTACTTCTAAAACAATTCCTGTTTGTTCAAGTAAAGAATTAAATTTAGCTGTTGAAACACCATTTGAACCTACAACTGTTAGTATGCTAGATGAGAGTGGCATGAATCAGTCATCCTCAGGGACAGTTAGAGATGTTCGTGATTCTTCAAGTGTTCCTGCTAATGAATCTGCTGATTCTGACGGTGTAGAATGCAAACCTGGATCATCCAACATAGATCTCGCCTGTAGCAACTCAAAGCCTGTGTCAATAGTTAATTTCAGAATAACTTGTGGGACAAATTTTGAGAATTCTGGACTAAGTGTAAACTCAAAGTTTGAGCGGTGTGTAGACAATTGTGAAATGAGTTGCAGCAGCAGGTCTATCAGAACTTCTTTCTCCCAAGAAAGTCCTACCTGTGGTTCTTTGTGTTATGAGCCGCCTCAGTTAAGTGGTTCAGTTCCTTTAGATTATCTTTCTTTAAGCCTGCAGAATGAGTACTGCTCTAATCCGATGTTGTCGCCTATCGATTACTTCACTCCAGCTAGTGTGAAGGGTAGTGAATTATGCAGTGAGACACCTGAATCATTTTTGAAAAAAGCTGCTGATACTTTTCCAAACACTCCTTCCATATTGAGGAGGAGACGGAACAGAGTCGAAACACAAACCCCTCCTTGTAAACTTTTGAAGGTAGAAAATCATTCTTGTACTTCTAATGAATCAGAGGGAACCAAGGATAATTCTGGTTCTGAGGTTGGGAGGTTCTCTGAGAATCCAGCAAGCCATGACAATGAGAGTGACCTTCCCAAGGCTTACAATGCATCTCCACCATACCAGTTGAGATCCAAGCGAACAGCTGTTCTCAAGTCCGTGGAGAAACAACTAGAATTTGCATTTGAGGAAAAAAAATGA 1608 0.4198 MLELKTEACCLENKQSTAASCSSVSEGSGSPINKSTEMCGPTSTSPSHRRTTGPIRRAKGGWTAEEDETLRNAVATYKGKNWKKIAEYFPDRTEVQCLHRWQKVLNPELVKGPWTLEEDDKIVELVSKFGPTKWSLIARSLPGRIGKQCRERWHNHLNPDIKKDAWTLDEELALINAHHTHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGRLPPVPKNNAQVAVKDTIRLSTSKTIPVCSSKELNLAVETPFEPTTVSMLDESGMNQSSSGTVRDVRDSSSVPANESADSDGVECKPGSSNIDLACSNSKPVSIVNFRITCGTNFENSGLSVNSKFERCVDNCEMSCSSRSIRTSFSQESPTCGSLCYEPPQLSGSVPLDYLSLSLQNEYCSNPMLSPIDYFTPASVKGSELCSETPESFLKKAADTFPNTPSILRRRRNRVETQTPPCKLLKVENHSCTSNESEGTKDNSGSEVGRFSENPASHDNESDLPKAYNASPPYQLRSKRTAVLKSVEKQLEFAFEEKK* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1264 535 PANTHER MYB-RELATED PROTEIN B-LIKE 19 474 - -
Amo04g1264 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Amo04g1264 535 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Amo04g1264 535 Gene3D - 164 235 - -
Amo04g1264 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Amo04g1264 535 MobiDBLite consensus disorder prediction 267 296 - -
Amo04g1264 535 MobiDBLite consensus disorder prediction 464 489 - -
Amo04g1264 535 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Amo04g1264 535 CDD SANT 113 157 IPR001005 -
Amo04g1264 535 PANTHER MYB PROTEIN-RELATED 19 474 - -
Amo04g1264 535 Gene3D - 58 110 - -
Amo04g1264 535 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Amo04g1264 535 MobiDBLite consensus disorder prediction 21 51 - -
Amo04g1264 535 MobiDBLite consensus disorder prediction 21 56 - -
Amo04g1264 535 Gene3D - 111 162 - -
Amo04g1264 535 MobiDBLite consensus disorder prediction 267 305 - -
Amo04g1264 535 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Amo04g1264 535 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Amo04g1264 535 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Amo04g1264 535 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Amo04g1264 535 CDD SANT 62 105 IPR001005 -
Amo04g1264 535 SMART sant 58 107 IPR001005 -
Amo04g1264 535 SMART sant 110 159 IPR001005 -
Amo04g1264 535 SMART sant 162 210 IPR001005 -
Amo04g1264 535 MobiDBLite consensus disorder prediction 462 514 - -
Amo04g1264 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Amo04g1264 535 CDD SANT 165 208 IPR001005 -
Amo04g1264 535 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1264 Amo-Chr4 59709909 59716073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1264 3 535 MYB Transcription Factor Family AT3G09370 46.727 1.27e-144 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo04g1264 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1264 K09422 - gmx:778081 773.852