Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1247 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGTCAATTGGCATCAGCAACAGCAACCAAATCATCAACAAAACAACACAGGTGGCACAAGCTCTCAACTTCTTCATCCTCCACCACCACCTCTTCCGCCATCGACTCAACAACATGGAGCCAGTACTAGCTCCATCAGACCTGGGTCGATGGCGGACAGGGCAAGGATGGCTAACATACCCATGCAAGAGCCAGCACAAAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGGCACTTCTGCAAGACCTGCCGGAGGTACTGGACCCGAGGCGGCGCTTTGAGAAATGTTCCGGTCGGCGGCGGCTGCCGGAGGAACAAGAGGACTAAAGGAACAACCACCAGCAACAACGGCTCCAAGTCACCACCACCGAGCTCTGATCGCGGAGGTCCCACCGTCTCTGGTGGCAGCTTTGCCTCTGAAATCGCAGGCCTAAGCCCTCCGGTGCCCTCGTCGCTGAGATTCATGGCTCCATTAATGCATCATCAGCAACTTGGAGATCACTTTTCAGGAGTTGGTGGCGGTGATTTAGGCCTAAACTACGCCGCAATTTCTGGTCCAATGGGAGGAATGGGTGACTTAAATTTTCACATAGGAAGTGCTTTGCGCAGTGATGTCACCGGTGGCGGCAATGGAGGCAGTTCTCTTCTATCAGCTGCAGGTTTGGAACAATGGAGGGTTCCACAAACACAACAATTTTCTTTCTTGACAGGTTTCGAAGCTTCATCACATGGCCTATACCAATTTGAAAATAGTACTAGTGAGGGTTCTGGATACGGCGGAGGCAGCAGTGGTGGTGGCGGTGCTATTCGGCCGAATAAGGTGTCGACTTTTGCCTCAGTAGTGAAGATGGAAGAAAGTAATAATAATTTGCCAAGGCAGTTTTTGGGGATGAATAATAATTCATCAAGTAATAGTGAGCATTTTGTTCCTGCTTCTTGGACACACCTTTCTGGTTTTACTTCTTCCAATACTACCAATAATCCTCCATAG 1065 0.4911 MVYTSIPAYIDPVNWHQQQQPNHQQNNTGGTSSQLLHPPPPPLPPSTQQHGASTSSIRPGSMADRARMANIPMQEPAQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGTTTSNNGSKSPPPSSDRGGPTVSGGSFASEIAGLSPPVPSSLRFMAPLMHHQQLGDHFSGVGGGDLGLNYAAISGPMGGMGDLNFHIGSALRSDVTGGGNGGSSLLSAAGLEQWRVPQTQQFSFLTGFEASSHGLYQFENSTSEGSGYGGGSSGGGGAIRPNKVSTFASVVKMEESNNNLPRQFLGMNNNSSSNSEHFVPASWTHLSGFTSSNTTNNPP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1247 354 MobiDBLite consensus disorder prediction 119 165 - -
Amo04g1247 354 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Amo04g1247 354 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Amo04g1247 354 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 6 350 - -
Amo04g1247 354 MobiDBLite consensus disorder prediction 17 59 - -
Amo04g1247 354 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 350 IPR045174 GO:0003700|GO:0006355
Amo04g1247 354 MobiDBLite consensus disorder prediction 131 157 - -
Amo04g1247 354 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Amo04g1247 354 MobiDBLite consensus disorder prediction 17 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1247 Amo-Chr4 58744179 58745974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1247 1 274 C2C2-Dof Transcription Factor Family AT2G37590 41.158 1.61e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo04g1247 zf-Dof 8.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1247 - - aip:107639364 602.438