Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1243 ATGGTGGTGGTGATAGAGCAGCAAGAGATCAAGGATCGAAACGCCAATCCCTCCAACGCGGTTGCCGGTAACGACGCTTCTGACGGTTTTGAAACGGCCAGCGACACCGACCTTGGCAGTGACAACGGAGGGGATGACGTCGGATCTAGCAGCCATGATCAACCGCTCGAGCAACCGCAGCAGCAACATCAACAGCAGCAGCTGAAGATAGAACATTTGGAGGCGGAGCCGGAGCAGAGTGTTTCTCCAAGTAATAGTTGCCCTGGGGATCTCTTGATCAATGAGGAGTTGGAGAAGAAAGCAATGGTTCAAGCAAATGAAGCAAAGGCAGAAGGGAACAAGCTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACTTGCTTTACAAGTTGCATCTGACATGTCTTCATTGGTTGAAATACGCTCAATATGCCATGCAAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACACAGTTAAAGAATGCACAAAAGCACTAGATCTGAATCCAGTGTACATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATCAGGCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAATTGATGAAGAGATGATTGCAAAACTAAAAGAAATGGGAAATTCTGTCCTGGGCCGTTTTGGGATGAGTGTCGATAACTTCAAAGCAGTTAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAGCGTTAA 831 0.4513 MVVVIEQQEIKDRNANPSNAVAGNDASDGFETASDTDLGSDNGGDDVGSSSHDQPLEQPQQQHQQQQLKIEHLEAEPEQSVSPSNSCPGDLLINEELEKKAMVQANEAKAEGNKLFVDGKYEEALSQYELALQVASDMSSLVEIRSICHANRAVCFQKLGKYDNTVKECTKALDLNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKREIDEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR* 277
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1243 276 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Amo04g1243 276 MobiDBLite consensus disorder prediction 1 67 - -
Amo04g1243 276 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 24 276 - -
Amo04g1243 276 MobiDBLite consensus disorder prediction 11 67 - -
Amo04g1243 276 SUPERFAMILY TPR-like 104 223 IPR011990 GO:0005515
Amo04g1243 276 SMART tpr_5 105 138 IPR019734 GO:0005515
Amo04g1243 276 SMART tpr_5 146 179 IPR019734 GO:0005515
Amo04g1243 276 SMART tpr_5 180 213 IPR019734 GO:0005515
Amo04g1243 276 Coils Coil 56 76 - -
Amo04g1243 276 Gene3D Tetratricopeptide repeat domain 57 244 IPR011990 GO:0005515
Amo04g1243 276 Pfam Tetratricopeptide repeat 150 177 IPR019734 GO:0005515
Amo04g1243 276 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 24 276 - -
Amo04g1243 276 Pfam Tetratricopeptide repeat 181 213 IPR013105 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo04g1243 Amo-Chr4 58270325 58274748 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1243 74 224 Calmodulin-binding Proteins AT3G25230 34.911 1.48e-15 74.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1243 K24926 - gmx:100808386 355.91