Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1238 ATGGAGGTTCAGTCTCTGCGATGCTTCATCTCCCTCTGCGTTCTGCTCGCGCTGCTTTCAATTGGCGCCAATGCAAGCAACTACAACGAGAAACAGATCACAGAATCAAGCAATGTAGGAGAAGCGAATTCGCAGAGCTTGGAGAATTCTCCAATGGCGAAAAGGTCAGATAATGATGATTCATCAAATTTGCATGCAGTTGATAATCCAGAGGAGATAGCTTCCATGGTTGATATGAGCATCCGCAATCACACGGTAAGAAGGAATCTGAACTTCTTCTCATGTGGGACCGGGAACCCAATAGACGACTGCTGGCGCTGCGACCGCCGCTGGTACCTCCGACGCAAGCGCCTCGCCACCTGCGCCATTGGCTTCGGCCGCAACGCCATTGGAGGCCGCGACGGCCGGTACTATGTCGTCACGGACCCATCCGACGACGACGCCGTGAACCCGAAGCCCGGCACCCTCCGCTATGCCGTGATCCAAGACAGGCCTCTCTGGATCGTGTTCAAGCGCGACATGATCATCACACTCAAGCAAGAGCTCATCATGAACAGCTTCAAGACAATCGACGGCCGCGGCTTCAACGTCCATATCGCCCACGGTGCCTGCATCACCGTCCAGTTCGTCACCAACATTATCATCCACGGCATCCACATCCACGACTGCATCCAAACCGGTAACGCCATGGTTCGCAGCTCTCCTTCGCATTACGGCTGGAGAACCCTCGCTGACGGTGATGGCATCTCTATCTTCGGCGCCAGCCATATCTGGATTGACCATAACTCCCTGTCTAATTGCTCTGATGGGCTTATTGATGCCATTATGGGATCTACTGCCATTACAATTTCTAACAACTACTTCACTCACCACAATGAGGTTATGTTACTGGGCCATAGTGATTCTTATGTAAGAGACAAGCAGATGCAAGTCACCATTGCTTATAACCATTTTGGGGAGGGTCTAGTCCAAAGGATGCCAAGGTGTAGACATGGATATTTTCACGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCCGATCCCACAATTAACAGCCAAGGCAATAGATACCTTGCCCCTCTGGATCATTTTGCTAAGGAGGTGACAAAGAGAGTATTAACAACAGAATCCACATGGAAAAAATGGAATTGGAGGTCTGATGGAGACCTTATGTTGAATGGTGCCTATTTCACTTCATCAGGAGCAGGAAATGCAGCTAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCTTCTTCTTTGGTTGGAACTCTTACGTCTGCTGCTGGTGTTCTTAACTGCCGGAGGGGTTTCATGTGTTAA 1344 0.4993 MEVQSLRCFISLCVLLALLSIGANASNYNEKQITESSNVGEANSQSLENSPMAKRSDNDDSSNLHAVDNPEEIASMVDMSIRNHTVRRNLNFFSCGTGNPIDDCWRCDRRWYLRRKRLATCAIGFGRNAIGGRDGRYYVVTDPSDDDAVNPKPGTLRYAVIQDRPLWIVFKRDMIITLKQELIMNSFKTIDGRGFNVHIAHGACITVQFVTNIIIHGIHIHDCIQTGNAMVRSSPSHYGWRTLADGDGISIFGASHIWIDHNSLSNCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPLDHFAKEVTKRVLTTESTWKKWNWRSDGDLMLNGAYFTSSGAGNAASYARASSLGAKSSSLVGTLTSAAGVLNCRRGFMC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1238 447 MobiDBLite consensus disorder prediction 34 66 - -
Amo04g1238 447 PANTHER PECTATE LYASE 18-RELATED 16 444 IPR045032 GO:0030570
Amo04g1238 447 SUPERFAMILY Pectin lyase-like 76 442 IPR011050 -
Amo04g1238 447 Gene3D - 98 440 IPR012334 -
Amo04g1238 447 MobiDBLite consensus disorder prediction 34 52 - -
Amo04g1238 447 PANTHER PECTATE LYASE 16 444 - -
Amo04g1238 447 SMART amb_all 173 370 IPR002022 -
Amo04g1238 447 Pfam Pectate lyase 183 362 IPR002022 -
Amo04g1238 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Amo04g1238 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Amo04g1238 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Amo04g1238 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Amo04g1238 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Amo04g1238 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Amo04g1238 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Amo04g1238 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1238 Amo-Chr4 57850342 57856939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1238 28 447 Polysaccharide Lyase AT4G13710 73.944 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1238 K01728 - gmx:100809277 754.977