Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1234 ATGTCTGGCCAGAGAAGCTCCACAACAGGTTTGAAGTTAACAGAGAATGAGATTAATGATCTTGTGTCAAGGTTGCAAGTACTTCTGCCACATCTGAACCAAAGAACCAACTCAAAGCATTCATTGTCAAAGATCTTGCAAGAAACTTGCAGTCACATTAGGAGGCTGCAGAAAGAAGTGGATGACCTTGGTGAAAGGCTAGCATTGCTAATGGATTCTATGGATATTAGTGATGTTGACAGAAGAGTTTTAGAAAACTTTTTGCAACAATAA 273 0.3919 MSGQRSSTTGLKLTENEINDLVSRLQVLLPHLNQRTNSKHSLSKILQETCSHIRRLQKEVDDLGERLALLMDSMDISDVDRRVLENFLQQ* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1234 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 56 IPR011598 GO:0046983
Amo04g1234 90 PANTHER DNA BINDING PROTEIN 1 90 - -
Amo04g1234 90 Coils Coil 46 73 - -
Amo04g1234 90 PANTHER DNA BINDING PROTEIN 1 90 IPR044172 -
Amo04g1234 90 Pfam Helix-loop-helix DNA-binding domain 17 57 IPR011598 GO:0046983
Amo04g1234 90 Gene3D - 15 85 IPR036638 GO:0046983
Amo04g1234 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 74 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1234 Amo-Chr4 57783682 57785339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1234 5 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 56.164 3.41e-18 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo04g1234 HLH 5.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1234 - - gmx:100810266 105.916