Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo04g1154 | ATGGCAGTGTCTCCTCCTCTTCCAAGCCAGTCTTTGGAAGCTGAATTTGAAGCTCAGAACTCTGAATCCCCACTCTTGCAAATTGGAAATGATGGCCTCACTAAACGTGTTATAAGGAAAGGTCTCACTTGGCAAACTCCATTCTTTGGAGACGAAGTTGAAGTTAATTTCAGAGGACAAGTTGAAAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCCTCGTTTCGTTTCAAATTAGGCCAATGTGAAGTTATCAAGGGTTGGGATGAAGGAGTTGGGAGCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATGCCACCTAACTTGGCGTATGGGGAAGTAGGGTCTCCACCACTGGTTCCTCCCAACGCGACTCTCATTTTCGAAATCGAATTGCTATCTTGGAATACCATTAGAGACTTGAATGGTGATGGAGGAATCATCAAAAAGATTCTAAAAGAGGGAGATGGATGGGCTACCCCTAAAGACGCTGATGAAGTTCTAGTGAAATATGAAGCAATGCTAGAGAGTGGCATGCTTGTCTCTAACTCTGACCAAGGTGTGGAATTTAATGTAAGTGAAGGCTATCTATGTCCTGCCATGAGTGTAGCAGTTAAGACCATGAGAAAGGGTGAGGTGGCAGAGCTAGCTTTGAAATTCTCTTATGGAATCATTCAAAATCCAGATAGAATCAAGGAGCCTGATGGTTTTCTCCAACCGGATTTCAAGATAATAACCATCAAACTAGAGTTAGTATCATGGAAAATTGTGACCGATGTCACAGGCGATAAGAAAATATTGAAGAAAATTAAGAAATCTGGTGAGGGGTTCGATCGTCCCAACGAAGGATCTCATGTGAAAGTTATATATTCATGTAAACAAAAAGATGGAACAATTATTCAGAAGAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAATTCAAGAAGGACAGGTGCCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTTGTGACTATCAGTGCTGATTATTTTAGTGACAACAATTCACAGGGAGAAGGAGAAGACACACCTAACAATAACAATAATAGTAATAATAAAGTCCTTTACTATGAAGTTGAATTGGTTGATTTCGTTAAGGAGAAACCATTTTGGAAGATGGACAACCAAGAGAAATTAGAAGCTTGTGAGAAGAAGAAGCATGATGGGAATTTGATGTTTAAGGCTGAAAATTTCAGGCGTGCATCCATGGAATATGAAAAGGCTGTAAAATGCATAGAGTTTGATCATTCATTCAGTGAAGATGAGAAGAGTCATGCAGATACGTTACGGTTATCATGTAACTTGAATAATGCTGCTTGTAAACTCAAATTGGGGGACTACACTGAAGCTTCCAGATTATGCACAAAGGTATCCTCTCATCCTCTTAATAATATGAGCTAA | 1449 | 0.3975 | MAVSPPLPSQSLEAEFEAQNSESPLLQIGNDGLTKRVIRKGLTWQTPFFGDEVEVNFRGQVENGASLESSYDKGSSFRFKLGQCEVIKGWDEGVGSMKKGERAIFKMPPNLAYGEVGSPPLVPPNATLIFEIELLSWNTIRDLNGDGGIIKKILKEGDGWATPKDADEVLVKYEAMLESGMLVSNSDQGVEFNVSEGYLCPAMSVAVKTMRKGEVAELALKFSYGIIQNPDRIKEPDGFLQPDFKIITIKLELVSWKIVTDVTGDKKILKKIKKSGEGFDRPNEGSHVKVIYSCKQKDGTIIQKKGSEEEPFEFTIQEGQVPEGLERAIMTMKKAEQALVTISADYFSDNNSQGEGEDTPNNNNNSNNKVLYYEVELVDFVKEKPFWKMDNQEKLEACEKKKHDGNLMFKAENFRRASMEYEKAVKCIEFDHSFSEDEKSHADTLRLSCNLNNAACKLKLGDYTEASRLCTKVSSHPLNNMS* | 483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo04g1154 | 482 | Gene3D | - | 258 | 383 | IPR046357 | GO:0003755 | |
| Amo04g1154 | 482 | SUPERFAMILY | FKBP-like | 24 | 138 | - | - | |
| Amo04g1154 | 482 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 373 | 474 | - | - | |
| Amo04g1154 | 482 | SUPERFAMILY | FKBP-like | 143 | 240 | - | - | |
| Amo04g1154 | 482 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 166 | 257 | IPR001179 | GO:0003755 | |
| Amo04g1154 | 482 | Gene3D | Tetratricopeptide repeat domain | 384 | 481 | IPR011990 | GO:0005515 | |
| Amo04g1154 | 482 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 162 | 228 | IPR001179 | GO:0003755 | |
| Amo04g1154 | 482 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 281 | 378 | IPR001179 | GO:0003755 | |
| Amo04g1154 | 482 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 50 | 135 | IPR001179 | GO:0003755 | |
| Amo04g1154 | 482 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 259 | 378 | - | - | |
| Amo04g1154 | 482 | Gene3D | - | 141 | 257 | IPR046357 | GO:0003755 | |
| Amo04g1154 | 482 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 9 | 260 | - | - | |
| Amo04g1154 | 482 | Gene3D | - | 8 | 140 | IPR046357 | GO:0003755 | |
| Amo04g1154 | 482 | SUPERFAMILY | FKBP-like | 256 | 401 | - | - | |
| Amo04g1154 | 482 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 373 | 474 | - | - | |
| Amo04g1154 | 482 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 259 | 378 | - | - | |
| Amo04g1154 | 482 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 9 | 260 | - | - | |
| Amo04g1154 | 482 | SUPERFAMILY | TPR-like | 392 | 474 | IPR011990 | GO:0005515 | |
| Amo04g1154 | 482 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 285 | 381 | IPR001179 | GO:0003755 | |
| Amo04g1154 | 482 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 50 | 138 | IPR001179 | GO:0003755 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo04g1154 | Amo-Chr4 | 51905885 | 51909095 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo04g1154 | 26 | 473 | Calmodulin-binding Proteins | AT5G48570 | 52.434 | 5.29e-158 | 459 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo04g1154 | - | - | adu:107494131 | 928.317 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo04g1154 | 04 | 51905885 | 51909095 | Amo19g0840 | 19 | 13722109 | 13725762 | PCT | |
| Amo19g0840 | 19 | 13722109 | 13725762 | Amo04g1154 | 04 | 51905885 | 51909095 | PCT |