Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1092 CAGAAGAAGGAGAAACTCGGGGAACGAATTGCAGCATTGCAACAGCTAGTTTCTCCCTTTGGGAAGACAGATACAGCTTCGGTTCTTCACGAGGCAATGGGCTACATAAGATTTCTCCATGACCAAGTTCAAGTGCTATGCTCCCCTTACTTGCAGCTCTTGCCTTCTTCTTCTTCTCCTTCTTCATTTCAACATCAATGTATCCAAGTTTCAAGAAATTTCAAGAAACCACTGATAGTTAACACCGTCTCTAGTGAGAAAACTGGAGCAGTTACATGTTTTGGAAGAGCGACCTATGCCATCATTTTTCCTGTGTTCAATCCTTCA 327 0.4281 QKKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQLLPSSSSPSSFQHQCIQVSRNFKKPLIVNTVSSEKTGAVTCFGRATYAIIFPVFNPS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1092 109 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 59 - -
Amo04g1092 109 CDD bHLH_AtbHLH_like 1 46 IPR045239 -
Amo04g1092 109 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 53 IPR036638 GO:0046983
Amo04g1092 109 Gene3D - 1 57 IPR036638 GO:0046983
Amo04g1092 109 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 39 IPR011598 GO:0046983
Amo04g1092 109 PANTHER TRANSCRIPTION FACTOR BHLH114 2 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1092 Amo-Chr4 48406443 48406966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1092 1 58 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 67.241 2.23e-23 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1092 - - sly:101257027 88.9669