Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1062 ATGGACAAGCTCTTTTCATTGAACTGTTGCATTGGTTACATTCTTATTGTTTACTCTCTCTTTGCATGTGTGCATGGCAAAGAACAATTGTCATGCAATCAAACACCATACCCAAATGTTTGCAAGCATTACGTTGAGACGGCTACATATACATTATCGACCCAAGATGAACATGTTTCTTCACCTTCTTATTCGTTCCACGGCATGGCCCTTAAGGTCACCATGGACCAAGCCATTAGAGCCCATGAACTAGTCTCAACCATGGACCCTAAAAACTTCAAAGAAAACAAAAAAGCCAAGATGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACTATTTATCAGCTGAACCGTTCAATGAAATCGAAAAACCTAAACGACAAGTTAACATGGCAAAGTGCTTCCATTGCAAACCACCAAACATGCCAAAACGGTTTCATTGAATTCAACTTGAATTCTCACCTAAACTTCTTTCCAACCATGCTGTCCAACTTCTCCAAATTGCTCAGCAACTCCTTGTCCATCACCAAGGCCGTGTCCATGTTAGAAGCGGAGCAAGAAGTGAGAGGAAGGAGGAGGTTATTGCTTTCATCATCATCAAATCATAACAAACACGGACATGGCGGCTTCCCTGAATGGCTATCGGTTTCCGATAGGAGGCTTCTTCAGGCGGCGACACCACCAAAGGGTGACGTGGTGGTGGCGCAAGACGGGAGCGGGAACTACAAGACGATAACGGAGGGAGTGGCGGCGGCGGCTAAGATTGGGGGAGGAAGGAGGGTTGTGGTGCACGTGAAAGCAGGAGTTTACAGAGAGAATGTTGATATCAAGAAGACAGTGAAGAACATAATGATAGTTGGAGATGGAATTGACGCTACCGTTGTCACTGCTGACGGTAACGCACAAGATGGATCCACCACTTTCCGTTCAGCTACTTTTGGGGTTTCCGGTGACGGGTTCATAGCGCGGGACATAACCTTTGAGAACACGGCGGGTCCACGGAAGCACCAGGCGGTGGCTCTCCGGTCCGGCTCCGACCACTCCGTCTTCTACCGCTGCAGCTTCAAGGGCTACCAAGACAGCTTATACGCCTACGCCCAGCGCCAATTCTACCGCGACTGCGACGTGTACGGCACCGTGGACTTCATCTTCGGCGACGCCGCCTGCGTCCTCCAGAACTGCAACATCTACGTCCGAAGACCCATGGGCAACCAGGACATCACCGTCACCGCCCAAGGTAGAACCGATCCCAACGAGAACACCGGCATCGTGATCCACAACTGCCGCATAACTGCTGCCGGCGACATGAGATCCGTTCAGGGCTCCTTCAAGACCTTCCTTGGGCGTCCATGGCAGAAGTACTCAAGAACCGTGATCATGAAGAGCGGCCTAGACGGCTTGATTAACCCGGCCGGTTGGAAACCATGGAGTGGAAGCTTTGCTCTCAGCACACTCTATTATGGTGAGTACATGAACACTGGTCCTGGTGCTAACACTGCTGGCAGGGTTCACTGGCCTGGCTTTCATGTTATTAGTAGTCCCTCTGAAGCTGTCAAGTTTTCTGTTGGTGATTTCTTGGCTGGTGGTTCATGGATTCCCGGCACTGGTGTCCCCTTTGATGCAGGTTTGTAA 1635 0.5003 MDKLFSLNCCIGYILIVYSLFACVHGKEQLSCNQTPYPNVCKHYVETATYTLSTQDEHVSSPSYSFHGMALKVTMDQAIRAHELVSTMDPKNFKENKKAKMAWEDCLELYEDTIYQLNRSMKSKNLNDKLTWQSASIANHQTCQNGFIEFNLNSHLNFFPTMLSNFSKLLSNSLSITKAVSMLEAEQEVRGRRRLLLSSSSNHNKHGHGGFPEWLSVSDRRLLQAATPPKGDVVVAQDGSGNYKTITEGVAAAAKIGGGRRVVVHVKAGVYRENVDIKKTVKNIMIVGDGIDATVVTADGNAQDGSTTFRSATFGVSGDGFIARDITFENTAGPRKHQAVALRSGSDHSVFYRCSFKGYQDSLYAYAQRQFYRDCDVYGTVDFIFGDAACVLQNCNIYVRRPMGNQDITVTAQGRTDPNENTGIVIHNCRITAAGDMRSVQGSFKTFLGRPWQKYSRTVIMKSGLDGLINPAGWKPWSGSFALSTLYYGEYMNTGPGANTAGRVHWPGFHVISSPSEAVKFSVGDFLAGGSWIPGTGVPFDAGL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1062 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Amo04g1062 544 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Amo04g1062 544 Gene3D - 228 544 IPR012334 -
Amo04g1062 544 PANTHER PECTINESTERASE 23 543 - -
Amo04g1062 544 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 179 IPR006501 GO:0004857
Amo04g1062 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 179 IPR035513 -
Amo04g1062 544 ProSitePatterns Pectinesterase signature 1. 258 277 IPR018040 -
Amo04g1062 544 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 23 543 - -
Amo04g1062 544 SUPERFAMILY Pectin lyase-like 226 543 IPR011050 -
Amo04g1062 544 SMART PMEI_2 25 176 IPR006501 GO:0004857
Amo04g1062 544 Pfam Pectinesterase 232 529 IPR000070 GO:0030599|GO:0042545
Amo04g1062 544 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Amo04g1062 544 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Amo04g1062 544 CDD PMEI-like_3 30 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1062 Amo-Chr4 45886046 45889456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1062 10 544 Carbohydrate Esterase AT1G23200 50.624 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1062 - - lja:Lj4g3v3099630.1 786.563