LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo04g0992	ATGCATCCCTCGTTGGCCCTCTGTCTATCGCACAATCAACACATCGGCATGGCCTCCTACTCCCTCAGCGGTATCTCTCTCGTAAACCGTCTTTGGATTCGGAACCCTCAATCGTTGGCCCTCTGTCTGTCGCACCATCAACACATTGGCATGGCCTCCTACTCCCTCAGTGCAGCGGTCTCTCTCTCTCGCAAACCCTCGTTTGATTCGGAACACTCAATCGTTGCTGTCTCTCCCTCAATCGGCACCGTAAGCACTGAACACTCCATCTTGAACTGGAAGGATTCAGCTGGGAACACCATTTTGCACAGAGCAACACTCAATGATAACAATCAGGAGGTACAGCATAGTACTGCCTCTAAAGCAGAAGACACATTATGTGGAGCAAAGATCACTGGTGGAGATAGTGCTGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGGGTTGATATTGGGTTTCTTCTTTTGAGAACTTTGATTGGAAAGATATTTGGCAGCATTGGATCAGTGGGAGGAGGCCTTGCTTTAGGTAAAGAGGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGTATTGAGAAGTGCTCGAGATCGTCGAGATTTGGTAACCTGTGGGTGTGCAGCAGGAGTTGCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTGGAGGAATCAACTTATGTGGCGTGTCTTCTTTACTTCTGCAATTGTTGCTGTTGTAGTGCGAACTGCAATGGGATGGTGTAA	792	0.4785	MHPSLALCLSHNQHIGMASYSLSGISLVNRLWIRNPQSLALCLSHHQHIGMASYSLSAAVSLSRKPSFDSEHSIVAVSPSIGTVSTEHSILNWKDSAGNTILHRATLNDNNQEVQHSTASKAEDTLCGAKITGGDSAAAGSGIPEIKGYLNGVDIGFLLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQVLRSARDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVEESTYVACLLYFCNCCCCSANCNGMV*	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo04g0992	263	SUPERFAMILY	Clc chloride channel	136	256	IPR014743	-
	Amo04g0992	263	Gene3D	Clc chloride channel	125	262	-	-
	Amo04g0992	263	PRINTS	Chloride channel signature	166	185	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Amo04g0992	263	PRINTS	Chloride channel signature	136	153	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Amo04g0992	263	PRINTS	Chloride channel signature	216	235	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Amo04g0992	263	Pfam	Voltage gated chloride channel	137	257	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Amo04g0992	263	PANTHER	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	134	256	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo04g0992	Amo-Chr4	39425880	39430353	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo04g0992	131	237	Ion Channels	AT5G26240	78.689	3.73e-41	148

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo04g0992	K05016		-	adu:107484201	265.003