Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0967 ATGGCCGGCGAAGTTGYCGGAGACCGGACGCYGGAGCTTCTTGCCATCGTCCACGACATCGCCGGYATGTGTGTCGGAGCCGTTGGGACCGGGTCCTCTGCCGCCGCAGCAGCACCCACACCACCACTTCCCGCCGCCATTGCTGGCGACGGCACCTTCAGGAAGGACTGCACCGATCTGGTGCGACGGATCTCTCTCCTCACGCACCTGTTCGAGGAGATTAAGGAGCTWAACAAGGTTGCCGACTCTGCTTCGAGTTCTTCKTCTGAAAGTGGTGGTGGTGGTGCTGCTGCTTCTGATGGCGATGGTGGTGGTGGTGCTGCTTCTTGGTCGTTTGATGTGGTGGTGGCGCTTCAATCGGCGAAGCGTTTGCTTTCGGTGGCGAGGAACTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACCATTATCTTCCAATTTCAGAGTGTGACATGGAAATTGGAAAAACTACTAAGCAACTTACCATATGATCATTTAGAAATTTCAGAAGAAGTCAGAGAACAGGTGGACTTAGTCAGAACACAATTAAGACGGGCCACGGATAAATACGGGTTTATGATTTCACAAATGCCATCATATAAATTATCTGAGCCACTTGCTCAAGAAATCAGTCAGGTTCCTGGTAGAACCACGAGTGGATTGCATAAACAACACAGCTGTCCTGAAAACTTATCAGAATTAGACAAAATCCGTACAAACGATGGAGGGGAAGTTTGCAGCAGACATCAGGGAGTTTCTCGCTTAGAAAGAGCCAGGAGCATCCCTACCATGTCTGAGATCTCCTTAACAAATGTTACTGATACCGAAAGTGAAGAAAACTCCGAGAGTAAGAGCCCACCTGAGGTTAAAAAGTCTGAAGGAGTTCTAATTCCCGAAGACTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCGGTTATTGTTGCCACCGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCTAAAACCCAGCAGAAGCTCCAGCATTTGACACTTACGCCAAACTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATACAGCACAACATTGAACAGCCAACAGGACTAACTAATGGAAAAATAAAGAAGAGTGACGGATCGTTCATAGATGTCACAGGTGACATAGCGGCAATCGAAGTCCTGGTACGGAAGCTCTCCAGCCGGTCTGTCGAGGATCGTAGAGCAGCCGTAACTGAAATTCGATCACTCTCCAAACGTAGCACGGACAACAGGATACTGATTGCTGAAGCCGGAGCAATTCCACTTCTAGTCAACCTTTTAAAATCTGAAGATGTATTGACACAGGATAATGTAGTCACTTCGATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTCATAATGCTTGCGGGTGCCATTCCATCCATCGTCCAGGTTCTCCGAACTGGAACCATGGAAGCAAGAGAAAATGCTGCAGCAACCCTCTTCAGCTTGTCACTTGCCGACGAGAATAAAATAATAATCGGTGCCTCAGGCGCTATACCTGCATTGGTAGAATTGCTCCAAAATGGGAGCCCAAGAGGGAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGTATTTATCAAGGAAACAAAGGCAGGGCCATTAGGGCAGGGATTATCACAGCACTGTTGAAAATGCTTACAGATTCAAGCAAATCGATGGTGGACGAAGCCCTCACAATAATGTCTGTTCTTGCCAGCCATCAAGAGGCAAAGGTAGCTATAGTTAAAGCCAGCACCATACCAGTTTTAATAGATCTCTTGAGGACCGGATTGCCTCGCAACAAAGAGAATGTGGCCGCCATTTTACTTGCATTGTGCAAGAGGGATACTGAAAATCTTGCTTCTTTAAGTAGACTTGGTGCTGTCATACCTCTTACCGAACTTTCAAGGAGCGGTACAGAGAGGGCAAAGAGGAAAGCTACTTCATTATTGGAGCATCTTCGTATGTTGCAGCAGGTTTGA 2034 0.4656 MAGEVXGDRTXELLAIVHDIAGMCVGAVGTGSSAAAAAPTPPLPAAIAGDGTFRKDCTDLVRRISLLTHLFEEIKELNKVADSASSSSSESGGGGAAASDGDGGGGAASWSFDVVVALQSAKRLLSVARNFRSNCSSDGAAKTIIFQFQSVTWKLEKLLSNLPYDHLEISEEVREQVDLVRTQLRRATDKYGFMISQMPSYKLSEPLAQEISQVPGRTTSGLHKQHSCPENLSELDKIRTNDGGEVCSRHQGVSRLERARSIPTMSEISLTNVTDTESEENSESKSPPEVKKSEGVLIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIQHNIEQPTGLTNGKIKKSDGSFIDVTGDIAAIEVLVRKLSSRSVEDRRAAVTEIRSLSKRSTDNRILIAEAGAIPLLVNLLKSEDVLTQDNVVTSILNLSIYENNKGLIMLAGAIPSIVQVLRTGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENVAAILLALCKRDTENLASLSRLGAVIPLTELSRSGTERAKRKATSLLEHLRMLQQV* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0967 677 Pfam U-box domain 298 369 IPR003613 GO:0004842|GO:0016567
Amo04g0967 677 SMART Ubox_2 301 364 IPR003613 GO:0004842|GO:0016567
Amo04g0967 677 MobiDBLite consensus disorder prediction 278 292 - -
Amo04g0967 677 MobiDBLite consensus disorder prediction 258 292 - -
Amo04g0967 677 Gene3D - 388 472 IPR011989 -
Amo04g0967 677 Coils Coil 170 190 - -
Amo04g0967 677 CDD RING-Ubox_PUB 302 344 IPR045210 -
Amo04g0967 677 ProSiteProfiles U-box domain profile. 297 371 IPR003613 GO:0004842|GO:0016567
Amo04g0967 677 SUPERFAMILY RING/U-box 298 372 - -
Amo04g0967 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Amo04g0967 677 Gene3D - 576 676 IPR011989 -
Amo04g0967 677 Gene3D - 473 575 IPR011989 -
Amo04g0967 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 603 IPR000225 GO:0005515
Amo04g0967 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Amo04g0967 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 479 521 IPR000225 GO:0005515
Amo04g0967 677 PANTHER U BOX DOMAIN-CONTAINING 49 673 - -
Amo04g0967 677 Pfam Armadillo/beta-catenin-like repeat 428 466 IPR000225 GO:0005515
Amo04g0967 677 Pfam Armadillo/beta-catenin-like repeat 510 548 IPR000225 GO:0005515
Amo04g0967 677 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 49 673 - -
Amo04g0967 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 371 IPR013083 -
Amo04g0967 677 SUPERFAMILY ARM repeat 397 671 IPR016024 -
Amo04g0967 677 SMART arm_5 591 631 IPR000225 GO:0005515
Amo04g0967 677 SMART arm_5 509 549 IPR000225 GO:0005515
Amo04g0967 677 SMART arm_5 468 508 IPR000225 GO:0005515
Amo04g0967 677 SMART arm_5 550 590 IPR000225 GO:0005515
Amo04g0967 677 SMART arm_5 427 467 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0967 Amo-Chr4 37391895 37395873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0967 51 672 U-box Gene Family AT1G23030 61.746 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0967 - - adu:107484242 1208.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2025 14 53717832 53721746 Amo04g0967 04 37391895 37395873 hybridization