Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0965 CTCACTCTTCTCATCTCTGTCAACCCTAACACAGCCATAACTCCATCTCTCACGACAACGCCGTCGTCTTCTTCTCTCAACCCATCACAACCCCTCCCTCCATCCCATTGTAGCACCTCTGTCCATCCCACCCTCATCGCTCATGCCCCGCGTCGCCGTCTCCTTCTCCCACACGTGTCGCACCACCCGTCAGCGCCAACCGTCAGCGCCACCGTCATTCTGCTACTCTCTCTTTTTCTCTCTACATGGACTCTCACTCACCCTCTTCCATCATCATTGCCGGTGTCGGCATCTCTGGTGTTTATCCATGAATCAGCGGCGGGATCTGGAAGGAAACAATCAGTGGCGTCTCCGTCGAGTTCGGTGCCGGATGCATCGGTAACGTTGGCGATTTTCATGAAGAATCTAACTGGGAAGACGATAACGCTAGAGATGGAGAGTTCTGATACTATTTATAATGTGAAGGAAAAGATACAGGACAAAGAGGGGATTCCACCGGAC 501 0.525 LTLLISVNPNTAITPSLTTTPSSSSLNPSQPLPPSHCSTSVHPTLIAHAPRRRLLLPHVSHHPSAPTVSATVILLLSLFLSTWTLTHPLPSSLPVSASLVFIHESAAGSGRKQSVASPSSSVPDASVTLAIFMKNLTGKTITLEMESSDTIYNVKEKIQDKEGIPPD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0965 167 MobiDBLite consensus disorder prediction 15 38 - -
Amo04g0965 167 Gene3D - 129 167 - -
Amo04g0965 167 Pfam Ubiquitin family 131 167 IPR000626 GO:0005515
Amo04g0965 167 PANTHER - 66 167 - -
Amo04g0965 167 ProSiteProfiles Ubiquitin domain profile. 129 167 IPR000626 GO:0005515
Amo04g0965 167 PANTHER UBIQUITIN 66 167 - -
Amo04g0965 167 PRINTS Ubiquitin signature 139 159 IPR019956 -
Amo04g0965 167 PRINTS Ubiquitin signature 160 167 IPR019956 -
Amo04g0965 167 SUPERFAMILY Ubiquitin-like 119 167 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0965 Amo-Chr4 37277178 37278002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0965 129 167 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 82.051 4.74e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0965 - K02927 aip:107613360 73.559