Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0949 ATGAGCAGCATCATTTTGCTGCTTCTGAATTCTGAAATGGTACATGAGCTCTCAGCCAACTCAACTATTAATTTGAAAAGGATGGGAATATATGATCCGTTCCATCAAGTTAGCATGTGGAGTGACAGCTTCAAAGTTGATGGCAGCCTGAATTCAGTTGCTTCCCCAATGTTAATGGTGAACACAAATATGGAGGAAAGTAAGCCTGAGTTTATTCCTCATGAATCAGGGGATCCTTCCGGAGATGATCAAGAGATTACTGATAAAGAAGTTAGTAAGGTGAATCGACGACTGGCACAAAATCGTGAGGCTGCACGGAAAAGCCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAGCTCATGCAATTGGAGCTGGAGATAGAGAAAGCAAGAAAACATGGTCTATATGTAGGGAGTGCATTAGATGATGGTTATACTGGCTCRCCGGGAACAATAACCTCAGGGTTAACGGTGTTTGAGATTGAATATGGACACTGGGTTGAACAACAGCATCGACAGAATGATGAACTCAGAAATGCATTGCACACTCATGCATCTGATATAGAGCTTCATCTACTTGTTGAGAGCAACTTGAATCATTATGCAAATCTTTTCCAGATGAAAGCAGAYATGGCAAAGATTGATGTATTTTATTTGATCTCTGGTGCGTGGAAAGCATCGGTTGAACGCCTTTTTCTTTGGATTGGAGGATCCCGTCCATCGCAWCTTCTAAATATCATAGTGCCACAACTTGAGCCTTTGAGCGATCAACAAATCGCCAGTATTAACAACCTCCGTCTATCGTCCCAGCAAGCAGAAGATGCGCTTTCACTGGGGTTGGAGAAACTACAGCAGGGTCTGGTCCACAGCATAGCAGTTGATCCAATGCTTATAGGAAACTATGGATTTCAGATGGCTGCCGCCCTTGACAATATTGAGGCTCTAGAAGGTTTTGTGAGCCAGGCAGATCACCTCAGGCAACAAACTCTGCTGCACATGTCTCGAATCTTGACGACCGGCCAAGCCGCTCGAGGTTTGATGATAATGGGAGAATACTTACAACGCCTTCGCACTCTTAGCTCTTTATGGTCATCTCGTCCTTGA 1122 0.4385 MSSIILLLLNSEMVHELSANSTINLKRMGIYDPFHQVSMWSDSFKVDGSLNSVASPMLMVNTNMEESKPEFIPHESGDPSGDDQEITDKEVSKVNRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIEKARKHGLYVGSALDDGYTGSPGTITSGLTVFEIEYGHWVEQQHRQNDELRNALHTHASDIELHLLVESNLNHYANLFQMKADMAKIDVFYLISGAWKASVERLFLWIGGSRPSXLLNIIVPQLEPLSDQQIASINNLRLSSQQAEDALSLGLEKLQQGLVHSIAVDPMLIGNYGFQMAAALDNIEALEGFVSQADHLRQQTLLHMSRILTTGQAARGLMIMGEYLQRLRTLSSLWSSRP* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0949 373 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 96 111 IPR004827 GO:0003700|GO:0006355
Amo04g0949 373 SUPERFAMILY Leucine zipper domain 94 124 IPR046347 GO:0003700|GO:0006355
Amo04g0949 373 MobiDBLite consensus disorder prediction 67 87 - -
Amo04g0949 373 PANTHER TRANSCRIPTION FACTOR TGA9 28 372 - -
Amo04g0949 373 ProSiteProfiles DOG1 domain profile. 162 372 IPR025422 GO:0006351|GO:0043565
Amo04g0949 373 Coils Coil 112 139 - -
Amo04g0949 373 PANTHER FACTOR TGA7, PUTATIVE-RELATED 28 372 - -
Amo04g0949 373 Gene3D - 92 140 - -
Amo04g0949 373 Pfam bZIP transcription factor 92 122 IPR004827 GO:0003700|GO:0006355
Amo04g0949 373 SMART brlzneu 89 149 IPR004827 GO:0003700|GO:0006355
Amo04g0949 373 Pfam Seed dormancy control 181 254 IPR025422 GO:0006351|GO:0043565
Amo04g0949 373 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0949 Amo-Chr4 34961609 34969805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0949 13 373 Calmodulin-binding Proteins AT1G77920 53.476 2.80e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo04g0949 DOG1 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0949 K14431 - gmx:100775882 494.582