Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0948 ATGCTGAGTGTGCATTCTTCAGCGACAAATACAAATAGTGGTAACGTTGATCAAAGCAACGCAATAGACTCTCAGCTTCAAGCTGCCGTTGCTGGGAAACGCCGCCGTGGAAGAAACCCTGTAGACAAGGAATATAGACGCCTCAAGAGATTATTGAGGAACAGGGTTTCTGCCCAACAAGCACGCGAAAGAAAAAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGACTTGGAAGATAAGAATTCCAACTTGGAAGAGCGCATCTCCACCTTAATCAATGAGAACACCATGCTCCGCAAGGTAACTGATTAA 318 0.4403 MLSVHSSATNTNSGNVDQSNAIDSQLQAAVAGKRRRGRNPVDKEYRRLKRLLRNRVSAQQARERKKVYVNDLESRAKDLEDKNSNLEERISTLINENTMLRKVTD* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0948 105 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 105 IPR004827 GO:0003700|GO:0006355
Amo04g0948 105 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 9 103 IPR044280 GO:0000981|GO:0045944
Amo04g0948 105 SUPERFAMILY Leucine zipper domain 45 102 IPR046347 GO:0003700|GO:0006355
Amo04g0948 105 MobiDBLite consensus disorder prediction 1 46 - -
Amo04g0948 105 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 9 103 - -
Amo04g0948 105 MobiDBLite consensus disorder prediction 1 26 - -
Amo04g0948 105 SMART brlzneu 42 105 IPR004827 GO:0003700|GO:0006355
Amo04g0948 105 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700|GO:0006355
Amo04g0948 105 Gene3D Single helix bin 65 104 - -
Amo04g0948 105 Coils Coil 62 103 - -
Amo04g0948 105 CDD bZIP_HY5-like 56 97 - -
Amo04g0948 105 Pfam bZIP transcription factor 43 102 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0948 Amo-Chr4 34686029 34693748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0948 22 103 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 73.171 9.14e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo04g0948 bZIP_1 3.4e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0948 K16241 - gmx:778143 151.754