Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0928 ATGTCTAACACCAGCAACAATGTGGCTGGGGTTGACAACACCTTCAGAAGAAAATTCGATCGAGAAGAGTATTTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAGGAGGAGGGTCGATCTAAATCTAAAGCTAAAGGTCCTCCAGTGCAGAGGAAACCCCTAAAACATAGAGATTATGAAGTGGACCTCGAGTCCCGCCTAGGCAAGACTCAAGTTGTTACGCCGGTTGCACCACTGAGTCAGCAGGCTGGATATTACTGCTCTGTTTGTGAGTGTGTGGTAAAGGACTCAGCGAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTTGAACGAGCCTCTCTCCAACAGGTTCAGGAACGATTTGAGGTTCTTAAGAAACGTAAAGATCTTGGCACATTCACTGAGCAAGATCTTGACGAAAGGGTCCTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAACGATTGCGTCGTGAAAAGAAGAAGGAAAAGAAAGAGAAGGCAGTGGAAGAACCGGAAATTGATCCTGATGTTGCGGCCATGATGGGGTTTGGTGGTTTCCGGTCATCAAAGAAATGA 606 0.462 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRSKSKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFEVLKKRKDLGTFTEQDLDERVLKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSKK* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0928 201 MobiDBLite consensus disorder prediction 155 201 - -
Amo04g0928 201 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 3 201 IPR040107 GO:0000398|GO:0005681
Amo04g0928 201 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Amo04g0928 201 Coils Coil 148 180 - -
Amo04g0928 201 MobiDBLite consensus disorder prediction 155 183 - -
Amo04g0928 201 MobiDBLite consensus disorder prediction 20 44 - -
Amo04g0928 201 Gene3D Classic Zinc Finger 79 117 - -
Amo04g0928 201 SUPERFAMILY beta-beta-alpha zinc fingers 80 122 IPR036236 -
Amo04g0928 201 Pfam Zinc-finger of C2H2 type 85 109 - -
Amo04g0928 201 MobiDBLite consensus disorder prediction 20 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0928 Amo-Chr4 32986355 32988846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0928 4 147 C2H2 Transcription Factor Family AT3G05760 82.639 3.01e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo04g0928 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0928 K12848 - gmx:100527057 314.309